Gambusia affinis (western mosquitofish): 122839409
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Entry
122839409 CDS
T07758
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04382
Cornified envelope formation
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122839409 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122839409 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122839409 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122839409 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122839409 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122839409 (col4a2)
Exosome [BR:
gaf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122839409 (col4a2)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122839409 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122839409
NCBI-ProteinID:
XP_043986879
LinkDB
All DBs
Position
LG11:complement(12317305..12371233)
Genome browser
AA seq
1671 aa
AA seq
DB search
MSATMQRQRDREHTNLRVLLLCLFLAALASTVQAGGKKHSGPCGGRDCSGGCKCFPEKGA
RGLPGPLGPQGPQGPPGRPGDPGIQGHKGQKGDQGTGGFIGPKGSMGMTGVPGFSGNDGI
PGHPGQAGSRGKPGADGCNGTKGEPGFPGLPGFDGTPGNPGLKGRKGQKGDSLEVSIYME
RFRGDPGRPGEDGFPGPTGPQGKEGSRGPIGPKGPPGPPGPRGPKGTMTKVLKGVKGETG
DIGPQGLPGNYTDQHRQPVTGLRGLPGDKGERGDLADNLDNKGETGIMGMPGPRGESGAD
GPRGRKGEPGYPGLKGRDGPKGGIGDPGELISSGFPWSAGGLPGPRGETGPDGERGRIGD
QGSPGPPGPPASDTQQQIWDFFGPFGVKGEQGDKGLPGDQGRPAVFPGPKGADGSPGSRG
PPGLRGSWKESFKGDEGPRGRPGNAGAKGFKGDHGECQCRNENFRRGLPGPAGERGDPGM
TGEFGYEGDMGDQGPRGADGFPGSAGLKGFPGPKGQKGETRFAREKGFPGEPGDPGIDGV
VGLHGSPGPNGLHGRPGSRGPPGEGPWGERGDKGFPGWPGRPGPAGLVGTPGESFVGIKG
QHGPPGDDGLAGYDGVQGTPGSPGDCIPHGAGGQVDVTGACEPIPGSPGQPGPPGLSGIS
GSPGVSGPRGFSGPQGVNGEKGEQGERGRGGTPGPRGFPGPRGDLGTPGSKGSLGNPGVP
GMPGRYGSQGEKGAHGEVMGASPGPPGDPGLPGLRGQKGQLGDQGLPGFSGINGMPGMIG
FRGLKGAPGLPGEDGRPGPAGRYGFPGDPGRSGPPGPAGTTGEPGRTGERGTEGDPGPPG
PIGLKGMPGAFGDDGVIGARGLPGDPGQPGATGRPGLQGLKGKKGSHGTSGFEGVTGNPG
LKGFGGQKGEPGTPGEVGLKGLSGPKGERGEQGLQGKPGVMSPKMLVHIKGAKGEHGHQG
IPGFTGPRGTKGDEGVPGYDGAHGLPGDPSDEKGVHGDPGAQGLPGIKGMPGTPGNRGIQ
GFGGMHGDKGGKGSPGAYGHSGVQGKKGGKGEKGIQVDLPGSPGLRGEDGFTGEPGLKGL
LGPIGDRGITGFDGIEGVKGGAGDLGIEGYPGLDGQRGTPGNQGQKGFPGIPGEDGQPGV
PGFPGSKGYPGLQGLYGLDGLKGEKGVSGTPGLDISGPAGETGVKGRKGESGIPNSQPGS
PGPSGLKGFQGNLGDFGQPGLPGLRGLQGPSGIPDIPGKRGDPGFPGPRGSQGYHGTRGP
PGLDAFPGEKGVQGENGFPGSTGARGSRGDSGPAGYRGPDGISGKKGLKGDQGHMGIPGQ
TGLQGERGPVGPKGDTGLPGFPGVPGSQGRPPPSITVPGERGLPGPRGIQGPKGTSGKPG
PRGPPGDPGFMGPVGVKGMPGISGTPGVPGYRGEVGNVGHPGLQGLEGQRGRPGGPGLPG
MAGRSISVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLPR
FNTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEKEIQPYISRCSVCEAPSVAI
AVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNG
AKGTCHYFANKHSFWLTSIDQSFHTQPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgaccatgcaaaggcagcgggatagagagcatacaaatctgagggtgctgctt
ctctgcctcttcctcgccgccctcgcctcgacagtgcaggctggtgggaagaagcacagt
ggcccatgtgggggaagagactgcagcggtggttgtaaatgctttccagagaaaggtgcc
aggggtcttccagggcctcttggtcctcagggcccacaggggcccccagggcgaccaggg
gatcctggtattcaaggacacaagggacagaaaggtgaccaaggaactggtggcttcata
gggccaaaaggcagcatgggaatgactggtgtacctgggttctctggaaacgacggcatc
cctggccacccaggacaagctgggtccagagggaaaccaggagcagacggctgtaacggg
accaaaggagaacctggattcccaggattacctggtttcgatgggacccctggaaatcct
ggtctaaaaggcaggaagggacagaagggggattctctggaggtcagcatttacatggag
cgcttcaggggagatccagggagaccaggagaggacggatttccggggcctacaggacca
caagggaaggaaggtagcagaggccctataggacccaagggtcctccaggtcctccaggg
ccacgtggaccaaagggcaccatgaccaaagtgttgaagggagtcaaaggagaaacaggg
gacatcggaccacagggcctaccaggaaactacactgatcagcatcgtcagcctgtcact
ggacttcgtggattaccaggtgacaaaggagaaagaggagatctggcagacaacttagat
aacaaaggagaaactggtataatgggaatgcctggccctcggggcgaaagtggtgcagat
ggacctcggggtcgaaagggtgagcctggttatccagggcttaaaggcagagacggtcct
aagggaggcattggtgatccaggggagctaatttcatcaggatttccctggtctgcgggt
ggtcttccagggccccgtggtgagacaggtccagatggagagaggggtcggatcggagac
cagggcagccccggaccacctggacctcctgcctctgacacacagcaacaaatttgggat
ttcttcggtccttttggcgtaaagggggagcaaggagacaagggtctaccaggagaccaa
ggaagacctgctgtctttccgggacccaaaggagctgatggaagtccggggagcagaggc
cctccgggactcagaggatcatggaaagagtcctttaaaggagatgaagggccgagggga
cggcctggcaatgcaggggctaaaggatttaaaggggatcatggagaatgtcagtgccgt
aatgaaaatttccgccgcggtttacctggtcctgccggtgagcgcggagatcctgggatg
actggagagttcggatacgaaggggacatgggagaccagggtccccgaggcgccgatggg
ttccctggatctgctggcctcaaaggttttccagggcccaaaggacaaaaaggagaaaca
cgttttgcgagagaaaaaggattccctggagagcctggagaccctggcattgatggagtg
gtaggattacacggttctccaggcccaaatggtcttcatggtcgccctggtagccgcggt
cctccaggcgaaggaccctggggagagcgtggagacaaagggtttcccggatggcccggt
agacccggtcctgctgggttagtggggacaccaggtgaaagctttgtaggtatcaaagga
cagcatggtccacccggtgatgacggcctcgcaggctatgacggagttcagggaacgcct
ggaagtcccggcgactgtattccacatggagctggaggacaggtggatgtgacaggtgct
tgtgaacctatcccaggttctcctggtcagcctggacctcctggactcagtggaatatca
ggttctccaggagtttcaggcccaagaggtttctcgggtccacaaggagtcaatggagag
aaaggagaacaaggagagcgcggcagaggcggcactcctggaccacgaggttttcctggt
ccccgtggagacttggggactcctggcagtaaaggctctttaggcaatcctggtgttccg
ggtatgcctggccgatacggatctcaaggggaaaaaggtgctcatggagaagtaatggga
gcatcgcctggccctccaggtgacccaggactacctggcctgcgaggacaaaagggccaa
cttggagatcaagggctgccaggcttttcaggaatcaacgggatgcctggcatgattggc
ttcaggggactaaaaggcgccccaggcctgccaggggaagacggaagacccgggccagct
gggaggtacggcttccctggagatcctggcaggtcaggcccacctggtccagcagggaca
actggagagccaggaagaactggagagagaggaacagaaggtgacccaggtcctccaggt
ccaataggattaaaaggaatgccaggtgcctttggagatgatggtgtgattggagcgcgt
ggcttgccaggtgaccctggacagccaggtgcaaccggacgaccaggccttcaaggactc
aaaggaaaaaaaggtagtcacggaacgtctggttttgagggagtcacaggaaatcctggt
ctgaagggatttggtggacaaaaaggggagcctggaacgcctggagaagttggcctgaaa
ggactgtcaggaccaaagggagagagaggcgaacaaggtctacaaggtaaaccgggggtg
atgtcaccgaaaatgcttgtccacataaagggagccaaaggagagcacggacaccagggc
attccgggttttaccggacccagaggtaccaaaggtgatgaaggtgtgccgggctatgat
ggggctcatggtcttccaggggaccccagtgatgaaaaaggagttcatggagatccaggt
gcacagggcctgccaggcattaagggaatgccagggacacctggaaacagaggcattcaa
ggctttgggggaatgcatggtgacaaggggggcaaaggaagccctggtgcctatggtcat
tcaggagtgcaaggaaagaaagggggaaaaggtgagaagggcattcaagtcgaccttcca
ggatctccaggattgagaggagaggatggatttacaggagaaccaggtctgaaaggtcta
cttggaccaatcggggaccgtggtataaccggatttgacggtattgaaggggtaaaggga
ggagctggggatctgggaatagaaggatacccagggttggatgggcagagaggaactcca
gggaaccaaggtcaaaagggttttcctggaattcccggggaagatggacaaccaggcgtt
cctggcttccccggaagtaaaggttaccccggcctacagggtctttatggattagatgga
ctgaaaggagagaagggtgtctcaggaacaccaggtctggacattagtggacctgctgga
gaaactggagttaaaggaagaaaaggagaaagcggtattcccaacagccagccaggttct
ccaggtccatcaggactgaaaggcttccagggaaatctgggtgactttggccaacctgga
ctgccaggattacgtggccttcagggaccaagtgggatcccagacataccgggaaagagg
ggggatcctggcttcccaggacctcgaggatcccaaggttatcatggaacaagaggaccg
cctggactggatgctttcccaggtgagaaaggtgtacaaggcgaaaatgggttccccggc
tccactggtgccagaggatctcggggagattcaggtccagcgggctacaggggccctgat
ggaatctctgggaagaaaggactgaagggagatcaaggtcacatgggaattcctggacag
actggcttacagggagagagaggaccagtgggcccaaaaggagacactggattgccaggt
tttcctggagtgcctggcagccagggccgtcctccaccttccattacagtcccaggagaa
agaggccttccaggaccgcgaggcatccaaggcccgaaagggacttcagggaagccagga
cctcgaggcccacctggagatccagggttcatgggacctgttggagttaaaggcatgcct
gggattagtggtactccaggagtgccaggttaccgcggcgaggtgggcaatgtggggcac
cctggtctccaaggcctggaaggtcaaagaggcaggcccggcggcccaggattacctggc
atggcgggccgcagtatcagcgtgggctacctgctggtgaaacacagtcagtcagaacag
acgccaatgtgtccggtgggaatgtctaaactgtgggacggttacagtctgctgtacctg
gagggccaagagaaggcccacaaccaggacctcggtttggctggttcctgcctcccacgg
ttcaacaccatgccctttctgtactgcaaccctggggacatttgctactacgccagcaga
aacgataagtcctactggctgtcaaccactgctcccctccccatgatgcctgtagaagaa
aaagaaatccagccgtacatcagccgttgctcagtttgcgaggctccgtcagttgccatt
gcggttcacagtcaggacatcaccatcccacagtgtcccctggggtggaggagcctgtgg
attggctactccttcctcatgcatacggcagcaggaaacgaaggcggcggtcagtccctg
tcatcgcccggctcctgcctggaggacttccgcacaacgccgttcattgagtgtaacgga
gccaagggcacatgccactactttgctaacaaacacagcttctggctgacatccatagac
cagtcgttccatactcagccatcgtcggagacactaaaagcaggccagctcctttcacgc
atcagtcgctgtcaggtctgcatgaagaacctgtga
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