Gambusia affinis (western mosquitofish): 122839410 Help Entry 122839410         CDS       T07758                                  Symbol col4a1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism gaf  Gambusia affinis (western mosquitofish) Pathway gaf04382   Cornified envelope formation gaf04510   Focal adhesion gaf04512   ECM-receptor interaction gaf04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:gaf00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     122839410 (col4a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     122839410 (col4a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     122839410 (col4a1)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     122839410 (col4a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:gaf04147]     122839410 (col4a1)    00536 Glycosaminoglycan binding proteins [BR:gaf00536]     122839410 (col4a1) Exosome [BR:gaf04147]  Exosomal proteins   Exosomal proteins of other cancer cells    122839410 (col4a1) Glycosaminoglycan binding proteins [BR:gaf00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    122839410 (col4a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  122839410 NCBI-ProteinID:  XP_043986881 LinkDB All DBs Position LG11:12371326..12411799 Genome browser AA seq 1642 aa AA seqDB search MLSPSGALLLLLLAALYCSLNLTQAEGCGASCGKCDCSGVKGAKGERGFPGLHGNMGFPG MQGNEGPPGPMGPKGDLGAPGAPGLKGVRGPPGLPGFPGNPGLPGLNGNDGPPGAPGIPG CNGTKGERGMDGITGFPGLQGPPGLPGLEGVKGDPGGVIGFIPLKGDSGVPGSPGRPGPP GIFGPNGPPGPRGYPGFKGDPGPPGPPGEKGDRLAFVSEKGDKGERGLRGPPGPPGPPEE STGQTTTVLVQGPQGEKGVKGDRGEKGFCLPHQKGIKGEQGPPGPRGKPGKDGEFGIKGE KGSSGVPGFPGLSGEKGEKGPPGYAEGPPGPPGPPGLPGKLGEKGFPGPEGEPGPPGRSI EGPRGEPGQKGERGEKGDRGRDGESLSGPSGKPGPVGPPGPPGSAPDPKECNMEKGDPGP PGPPGLSGEDGQKGDKGDVCVRCDGQPGLPGPAGVKGEQGPPGAVGGKGEKGRSGPPGEP GTPGSSGPPGLMGAPGAVGDPGDVFIAPGYKGEKGLPGRPGLQGQPGREGVPGRDGLPGQ PGLKGEPAKEGIKGERGPEGDPGLMGPPGERGPPGIPGFGRSGEPGEKGSQGQPGRPGAP GRPGLKGEPGKGFSTPGPPGPPGPRGANGMPGLQGDRGEAGDQGLPGFPGEKGEQGPPGI GFPGPAGAKGISGIPGAPGLPGEPGRPGQDGSTGKAGPPGQKGEPGRGLPGPKGAQGHQG VTGFPGDKGGVGLPGIPGSEGQTGPPGLQGVKGDVGPPGPPGQVGQPGAPGKGLPGPQGP QGPHGERGPHGREGIKGEKGFPGPPGLDMPGPQGDKGAPGFPGDPGTKGQTGLPGLPGRD GLIGYQGPKGEMGVMGIPGTPGFPGPPGQPGSPGLRGDPGVTGLRGESGKEGEKGERGEE GPPGPPGNLTQTDMEHMKGEKGDIGDPGERGFAGEKGHPGVQGEPGMAGKDGAPGTPGQP GQKGDPGFPGDPGTMGPPGPKGGVGEMGIPGPVGPKGSKGDIGTPGHPGFRGTDGEKGDP GLPGEPGIGVPGFPGEKGRTGEPGAPGSRGDKGEKGQEGMPGKPGLLGPKGDKGGAGYPG QAGRPGEKGSPGLPGSAGEPGREGRPGEGGQQGPPGPRGDKGERGQDGIPGSSGERGDPG LPGVGVPGPPGALGERGEKGDPGLPGMPGQSGVPGIKGEKGLPGPQGSQGEPGERGLPGI SLEGPKGDQGATGPIGVTGTPGAPGPAGEPGREGLKGEKGDAGRPGYQGESGQKGDSGSP GYPGPPGLPGINGQKGERGLPGVAGFPGIKGTLGDVGFKGEAGDRGFPGEKGNEGPPGPP GPRLFIKGDTGLPGDQGFPGPQGPPGFPGQKGEQGVTGIQGPKGETGIHGFDGQPGAKGE PGVAGPQGPRGYPGPPGPDGVQGQVGPPGPSSMDHGFLVTRHSQNVEVPPCPGGTTQIYD GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM PMSMAPITGDSIKPFISRCVVCEAPAMVIAVHSQTIRIPPCPQGWDSLWIGYSFVMHTSA GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIETEDMFTKPVPTT LKAGSLRTHISRCQVCMKRTFT NT seq 4929 nt NT seq  +upstreamnt  +downstreamnt atgctgtcaccgtccggcgcgctgctgctgctgctgctggcggctctctactgcagctta aacctgacgcaggctgagggttgtggagcttcatgtggaaaatgtgactgcagtggagtg aagggagccaagggtgagcgtggatttcctggccttcatgggaacatgggattcccagga atgcaggggaatgagggccctcctgggccaatgggccccaagggagatcttggagcacct ggagctccgggactaaaaggagtgcgaggtcctcctggtctgcctgggtttccagggaac ccaggacttccgggcctcaatggaaacgacggtccgccaggtgcgcctggaatcccagga tgcaatgggaccaaaggtgaaagaggaatggacggcattactggttttccaggacttcaa gggccgcctggcctcccaggtctggagggagtgaaaggagatcctggtggtgtgattggg tttatcccccttaaaggagacagtggggttcctggctcacctggacgaccgggaccacct ggaatctttggaccaaatggacctcctggacccagaggatacccaggatttaaaggggac cctggacctcccggccctccaggagagaaaggtgacaggttggcctttgtgagtgaaaaa ggagacaagggtgaacgaggactcagaggcccacctgggccccctggaccacctgaagaa agtacaggacagaccacaacagttcttgtacaaggaccacagggggagaaaggagtgaag ggggacagaggcgagaaaggtttctgtcttcctcaccagaaaggaatcaaaggtgaacaa ggcccacctggaccacgaggtaaacctggtaaagatggagagtttggaataaagggagaa aaaggttcctcaggagttcctggattccctgggttgtcgggcgagaaaggagaaaaagga ccaccgggttacgctgaaggtccacctggccctcctggcccacctggtctcccagggaaa ttgggagaaaaaggttttcctggtcctgagggagagcctggcccaccaggccgctccatc gagggtcctcgtggagaacctgggcagaaaggagaaaggggtgagaaaggggacagaggc agagatggagaatctctttctggaccatcgggaaaaccagggcccgtcggacccccgggg ccaccaggatcagcacctgaccctaaagagtgtaatatggagaaaggagaccctggtcca cctggacctcctggattatcaggggaggacggacaaaaaggtgataaaggagacgtttgt gttagatgtgatggtcaacctggactacctggccctgcaggtgttaaaggagagcaagga ccaccaggcgcagttggaggtaaaggagaaaagggtcgctctggtccacctggagaacct ggaacacctggttcttcgggacctcccgggctgatgggggctcctggtgctgtaggggat cctggagacgttttcatagcacctggttacaaaggagagaaaggtcttcctggacgtcct ggattacagggacaacctggcagggaaggagtgccagggagagatggactcccgggtcaa ccggggctcaaaggagaacctgccaaagaaggcattaaaggtgaacgtggcccagagggt gaccccggcctcatggggcctcctggagaaaggggccctcctggtattccagggttcggc cggtcaggtgaaccaggagagaaaggcagtcagggacagccaggccgtcccggagctcca ggacgacctggtctgaaaggagagccaggtaaaggttttagcactccgggacccccagga ccgcctggaccgaggggagctaacggcatgccgggacttcaaggtgacagaggtgaagca ggtgaccaaggtctgccaggctttcctggagaaaagggggaacaaggaccgcctggaatc ggctttcctggcccagcgggtgccaaaggtatcagtggaatccctggagccccaggacta cccggagagccagggaggccaggacaggacggctcaactggaaaagctggtccaccggga caaaaaggtgagcctggacggggtcttccaggaccgaaaggtgcgcagggccaccaagga gtcacaggttttcctggagataagggaggcgtgggactcccggggattcccggctcagag ggacagacaggtcctccgggacttcagggagttaaaggcgacgtcggacctccgggacca cccggtcaggtcggccaaccgggtgctccggggaaaggtttgcctggaccacaaggacct caaggaccacatggagagagaggacctcatgggagagaaggtataaaaggagaaaagggc ttccctggccctccaggccttgatatgccgggacctcagggagacaaaggagcccctggc ttcccaggagacccaggtaccaaaggacagacgggtctgccaggcttacccggccgagac gggttgatagggtaccaaggtcccaaaggtgaaatgggggttatgggaattccaggaacg ccgggattcccaggaccaccggggcaacctgggtcgcctggtctgagaggggatcctggt gttactggactgagaggagagtctgggaaagaaggagagaaaggtgaaaggggagaggag ggtccgccaggtcctccaggaaacctcactcaaactgacatggagcatatgaagggggaa aagggagacattggagatccaggtgaacgtggttttgctggagagaagggccaccctggc gtccaaggagaaccgggaatggctggcaaagatggtgcacctggaacacctggccagcca ggtcagaaaggagatcccggctttcctggagatcctggtaccatgggacctccaggaccg aaaggcggcgtgggagagatgggaataccaggtccagttggtccaaaaggttccaaagga gacatcggtacaccgggtcatcctgggttcagaggcacagatggtgaaaaaggagacccg ggactacctggcgagccaggtattggtgtccctggatttccaggagagaagggcaggaca ggtgagccaggagctccaggatcccgtggagacaagggtgagaagggtcaggagggaatg cctggcaaacccggcctgctgggaccaaagggcgacaaaggaggcgctgggtacccaggt caggcaggcaggccaggcgagaagggcagtcccggacttcctggatctgccggagagccc ggtcgtgaaggtcgccctggggaaggtggccagcagggacctccgggtcctcgcggagat aagggtgagcgaggacaggatggcatccctggatcctctggggagagaggagacccaggt ttaccaggtgtcggtgttcctggacctcctggagctctcggtgaaagaggtgaaaaaggt gatccgggtcttcccggcatgcctggtcaatcaggtgttcctggtattaaaggagaaaag ggacttcctggacctcagggatcacagggggagccaggagagcgaggtcttcccggcatc tcgctggaaggccccaagggagatcagggagcaacaggacccattggagtaactggaaca ccaggggcaccaggacctgctggagagccaggcagagagggcctaaagggcgagaaaggt gacgcaggtcggcctggttatcagggagagtcgggacaaaagggcgactctggatctcct ggatatcctgggccacccggccttccgggtatcaacggccagaagggcgagcgaggatta ccgggagttgccggcttcccaggcattaaaggtactctgggtgacgttggatttaaaggc gaagcaggtgacagaggcttccctggagaaaaaggtaatgaagggccccctggtccacct ggccccaggttgttcatcaaaggagacactggactcccaggagatcagggtttccctgga cctcagggaccaccgggctttcctgggcagaaaggagagcaaggtgtgacgggtattcag ggtccaaaaggtgaaacaggtatccatggatttgacggtcaaccaggcgccaaaggagaa cctggtgtggcggggccacaaggacccagaggatatccaggtccaccgggaccggacggt gttcaaggtcaagtgggtccgcctggcccgtcgtccatggaccatggtttcttagtaaca cgccacagtcaaaatgtggaggtgccaccgtgccctggaggtaccactcaaatatatgat ggctactcgttgctttatgtgcaaggcaatgagcgctcccatggacaagacttaggtacg gcaggcagttgcctccgaaagttcagccccatgccgttcttgttctgcaacatcaacaac gtttgcaactttgcgtctcgtaacgactactcctactggctcacctcgccggagccaatg cccatgagcatggcacccatcaccggggacagcatcaaacccttcatcagcaggtgtgtt gtatgtgaagctccagccatggtgatcgcagtccacagccagacaatcaggatcccacct tgccctcaaggctgggactctctgtggatcggctactcctttgtcatgcacaccagcgca ggtgctgagggttcaggtcaggctttggcctctcctggttcctgtctggaggagtttcgc agcgccccattcatcgaatgtcacggtcgaggaacctgcaactactacgccaactcctac agcttctggctcgccaccatcgagacagaggacatgtttacgaaacccgttccgacgaca ctcaaagcaggcagcctccgaacacacataagccgctgtcaagtgtgcatgaagaggaca ttcacttaa

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