Gambusia affinis (western mosquitofish): 122839513
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Entry
122839513 CDS
T07758
Symbol
sf3b1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122839513 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122839513 (sf3b1)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122839513 (sf3b1)
Spliceosome [BR:
gaf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122839513 (sf3b1)
Complex B
122839513 (sf3b1)
Complex C
U2 SnRNP specific factors
122839513 (sf3b1)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122839513 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
122839513
NCBI-ProteinID:
XP_043987062
LinkDB
All DBs
Position
LG11:2721671..2737456
Genome browser
AA seq
1286 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLQEENGEQGVGLVSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKIADREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMMEQNLSKEEREIRLQLAEKAKS
GDLKAVNGSAASQAAAKRKRRWDQTADQTPSNATPKKLSSWDQADAGAETPGHTPAHTPS
NSHTPAGAATPGRDTPGHATPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDR
GEESVGETPTPGASKRKSRWDETPASQMGSSTPLLTPGKTPLGTPAMNMATPTPGHLMSM
TPEQLQAWSEQLIIDEQGRPLLNNXATPFCPSCLQVLPPPAGYVPIRTPARKLSATPTPI
GGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIM
KLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDR
ILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDID
NMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCA
ILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQH
RGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGT
DGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLK
DEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVV
NALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVL
YEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDL
VGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLL
NNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYI
GEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPN
VFETSPHVIQAVMGALEGLRVALGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQD
ALIAHYPQVYNDEKNVYVRYELEYAL
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatatcgaggcccagatcctggagatccagggg
atgaaggccaccctgcaggaggagaatggcgagcagggcgtgggtctggtctccactggc
ttctacgaccaggagatctacggcggcagcgacagccgcttcgctggttatgtcacttca
atcgcagccaatgagcaggaggacgacgatgaagacgacacgtccaccagcctactgggg
cagaagaaacctggctaccacgcgccggtggcaatactcaactccatccctcagtcggat
gagcagtacgacccgttcgcagaacatcgtccgcagaagatcgccgatcgggaggacgag
tacaaagcccgccgcagacagatgatcatctctcccgagcgtcttgacccttttgctgac
gggggcaaaacaccggaccccaagctgcaggtcaggtcttatgtggacgtgatgatggaa
cagaacctgtccaaagaggagagggagattcgtctgcagctggcagagaaggccaagtcg
ggggatctgaaagctgtcaatgggtctgctgcctcccaagctgctgccaaacgaaagcgc
cgctgggaccagacagctgaccaaactccgtccaacgccacacccaaaaaactgtccagc
tgggaccaggcagacgccggggctgagactccaggacacactcctgcacacacaccttcc
aacagccacaccccagccggcgccgccacgcctggccgggatacgccaggccacgctacg
cccggccatggtggcgccacggggagcgtccgcaagaaccgctgggacgaaaccccaaag
acggagcgcgagacgccgggacacggcagcggctgggccgagacgccgcgcacagacaga
ggggaggagtcggtgggggagaccccgaccccgggagccagcaagaggaagtctcggtgg
gatgaaacgcccgccagccagatgggctcctccacaccgctgctgacgcctggaaaaact
ccattaggaacgccagccatgaacatggccacacctacacccggacacctgatgagcatg
accccagagcagctccaggcctggagtgaacaattgataattgatgagcaaggaagacct
ctgctaaataattaagctacgccattctgtccttcctgtctgcaggtgttgcctcctcca
gcggggtacgtaccgattcgtactccggcccgtaagctgtcggccactcccaccccaatc
ggaggcatgacgggcttccacatgcaggcagaggaccggaccaccaagcagatgaacgac
cagccctcaggaaacctccccttcctcaaacctgatgacattcagtactttgacaaactg
ctggtggaggtggatgaatcaactctgagccccgaggagcagaaggaaaggaagatcatg
aagctgctgctgaagattaagaatggaactcctcccatgagaaaggccgctctgcgccag
ataactgacaaagctcgagagtttggagcaggtccgctcttcaaccagattctgccgctg
ctcatgtcccccaccctggaagaccaagagcgccatctgctggtcaaagtcatcgaccgc
atcctctacaaactggacgacctggtccggccgtacgtgcacaagatcctggtggtgatt
gagcccctgctgatcgatgaggactactacgccagagttgaaggcagagaaatcatctcc
aacttggcaaaggctgctgggttggccacgatgatctctacgatgcgacccgatatcgac
aacatggacgagtacgtcagaaacaccacggctcgagccttcgccgtggtggcctccgcc
ctcggcattccttcgctcctccccttcctcaaagccgtgtgcaaaagcaagaagtcgtgg
caggctagacacacgggcatcaagatcgtgcagcagatcgccatcctgatgggctgcgcc
atcctgcctcacctgcgcagcttggtggagatcattgaacacggtctggtggacgagcag
cagaaggtgaggaccatcagcgctctggccatagctgccctggccgaggccgccactccc
tacggaatcgagtcgtttgactctgtgctgaagccgctgtggaagggcatccggcagcac
agaggaaagggtctggctgcgttcctcaaagctatcggctacttgatccccctgatggac
gccgaatacgccaactactacaccagggaggtgatgctgattctcatcagagagttccag
tcgcctgatgaggagatgaagaagattgtgctgaaggtggtgaagcagtgttgtggcact
gatggtgtggaagcaaactacatcaaaactgagatcctgcccccgttcttcaagcacttc
tggcagcacaggatggctctggacagacgcaactacagacagctggtggacaccaccgtg
gagctggctaacaaagtgggagcagccgagatcatttcccgcattgttgacgacctgaaa
gacgaggcggagcagtacaggaagatggtgatggagaccatcgagaagatcatggggaac
ctgggagccgctgacattgaccacaagctggaggagcagctgattgacggcatcctgtac
gccttccaggagcagactacagaggattctgtaatgctgaatgggttcggtacagtggtg
aacgccctggggaagcgcgtgaagccgtacctgcctcagatctgcggtacggtgctgtgg
cgtctgaacaacaagtcagccaaagtccgccagcaggcggccgacctcatttcccgcacg
gcagtggtgatgaaaacctgtcaggaggagaagctgatgggtcatttgggcgtggttctg
tacgagtacctgggagaggagtaccccgaggtcctgggcagcatcctgggagcgctgaag
gccattgttaatgtcataggtatgcacaagatgactccaccaatcaaagacctgcttcct
cgtttgacacccatcctgaagaaccggcatgagaaggttcaagagaactgcatcgacctg
gtgggccggatcgctgataggggtgctgagtacgtgtcagccagagagtggatgaggatt
tgctttgagttgctggagttactcaaagctcacaaaaaggcaatccgcagagctaccgtc
aacacctttggttatatcgccaaagccatcgggccgcatgacgtgttggccactctgctg
aacaatctgaaggtccaggagcgtcagaaccgcgtgtgtacaaccgtggccatcgccatc
gtggcagagacctgttcaccgttcacggtgctgccggcgctcatgaacgaatacagagtg
cctgagctaaacgtgcaaaacggcgtcctgaagtcgctctcgttcctgtttgagtacatc
ggagaaatgggaaaagactacatctacgccgtcacacctctgctggaggacgcattaatg
gacagagatttggtccacagacagaccgccagcgccgtcgtccagcacatgtctctgggt
gtctacggttttggctgtgaagactccctcaaccatttactgaattatgtgtggcccaac
gtttttgagacgtctccccacgtcatccaggctgtaatgggcgccctggaggggctgaga
gtggccctcggcccctgccgcatgctgcagtactgcttacagggtctgttccatccggcc
cggaaggtgagagatgtctactggaagatttacaactccatctacattggttcccaggac
gccctgattgctcattacccacaagtctacaacgatgagaagaacgtctacgtccgctat
gagctcgaatatgctttgtaa
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