Gambusia affinis (western mosquitofish): 122839539
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Entry
122839539 CDS
T07758
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122839539 (col18a1a)
00535 Proteoglycans [BR:
gaf00535
]
122839539 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122839539 (col18a1a)
Exosome [BR:
gaf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122839539 (col18a1a)
Proteoglycans [BR:
gaf00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122839539 (col18a1a)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122839539 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
122839539
NCBI-ProteinID:
XP_043987142
LinkDB
All DBs
Position
LG11:27950460..28024367
Genome browser
AA seq
1519 aa
AA seq
DB search
MRSWFKALPLLTLWVVYSEAWFWSWSETGTTLAPGLELEGSGIATGSGEPPSESSTTAGA
EITDEGHVLQTVGQTWDETTEGPRVTTVVPSTGRGEGQTTAGTTSRRSKPDAAAPSVGEQ
QLSQADVVVEAPAESSTATHSSHCLKLDSSLPFCSSMMGENFAVPNYFNHSSVGEVRALL
EEWAPLLQSRCHHAAEWFLCLLLVPECGPGATPPALPCRRFCEVLRDSCWVLLDEGRLPV
ECQALPDEEDDGFRCLSVCNQKEDSGVSLLQLIGDPPPEKILEVDGPDNSPAYLFGPESA
TGQLARAHFPNPFYRNFALIFSLKPTSDDGGIIFSITDSSQQIMHLGVKLSAVQGSKQNV
VLFYSEAGARQSKEAARFHVPSMTNAWNRFAVAVKDDKAMLYLNCDVEPQVMLMARSARE
LVLESGSGVFVGQAGGEHPDKFKGAISELRVVGDPSAAARFCEEDDDSDMASGEGSGYGE
TRRPKPFSEKPQQTTAVESLPPMQQPPLERTVQRAQAGAAAAKGEKGDRGDRGEKGDQGP
TGPKGDTGSGSQGGIRGLKGEPGEKGAKGSAGFGYPGSKGEPGPPGPPGPPGSPGPTTQY
SADGSIVSKVPGPRGPPGPAGPQGPPGEDGEPGDPGEDGKTGPQGPPGFPGTPGDAGVKG
EKGDRGEGQPGPRGPPGPPGPPGTGYRSTFEDMEASGFPDMVSVRGLPGPPGPPGPPGPP
GLNSASTSVNSGAVGPPGKDGAPGQPGLPGLPGADGLPGAPGPRGEKGDSGDLGLPGAIG
QKGSLGEPGLPGPTGEPGLAGLPGPMGPVGPPGPPGPPGPGHRVGFDDMEDSSGIFTNGL
PGVRGPEGIQGPPGLPGQPGKPGFPGTEGPKGEQGLAGRDGLPGLDGFPGPPGQKGDRGD
KGETGEPGRDGTGLPGSPGPPGPPGQIIYQPSDNGVAGLPGRAGFPGPVGPKGDRGDPGS
PGYGLKGEKGEPGLMIGPDGNPLYLGGLTGTKGDRGLPGPIGPSGPQGPPGLKGEIGMPG
RPGRPGVNGYKGEKGESGTGAGYGYPGVAGPPGPPGPPGPPGPAIALDRFNRFDENSRGY
QAVKGEKGERGDRGSPGIPGTASNFDIYAFKNELKGDQGDPGVKGEKGEPGGGYYDPRFG
GPVGPPGPPGNPGLPGPKGESIAGPPGPPGPSGPPGVGYDGRPGPAGPPGPPGPPGNPSF
SGTYRPNYPVSVPGPPGPPGPPGSPGPSSGVTVLRSYDIMIATARQQPEGNLIYILDKAD
LYLRVRDGLRQVLLGDYRTFFGDLGNEVAEVQPPPVVVYPHTPERTSNNGAGHYSQSSVV
IRPAEPPLRQPSTPVAPAADSSESGLHLVALNAPQTGNMRGIRGADFLCFQQARAVGLKG
TFRAFLSSKLQDLYTIVRRSDRNGFPIMNLKNQVLFSSWESIFSEDSNKMRENVSLYSFD
GRDILRDSAWPEKMVWHGSSKKGHRQMDHYCETWRAGEHAVTGLASSLQSGRLLQQTPSS
CSGSYIVLCIENAFTSPYK
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctggtttaaggctttgccccttctgaccttgtgggtggtctactccgaggct
tggttctggtcctggagtgagaccggcacaacgttggcgcccgggttagaactggagggt
tctggcattgcaacaggtagtggagagcctccatctgagagcagcaccacagctggagca
gagatcactgatgaaggacacgtgctccaaacagttgggcagacttgggatgagaccact
gaaggtcctcgagtgacgactgtagttccttcaacggggcgtggagagggacaaaccacc
gcagggacaacatcacgcaggagcaaacccgatgctgctgcaccatcagtaggggaacaa
cagcttagccaggcagacgtagttgttgaggcaccagcagaatcctcaactgcaactcat
tcctcacattgcttgaagctagattcctctctacctttctgctcctccatgatgggggaa
aactttgccgtgcccaattacttcaaccacagcagcgtgggggaagtccgggcgctcctg
gaagagtgggcgccgctgctgcagtcgcgctgccaccacgccgcggagtggtttctctgc
ctcctcttggtgccggagtgtggccctggggccacgccacccgcgttgccttgccggcgt
ttctgcgaagtgttgcgggacagttgctgggtgctcctggatgagggtcgcctccctgtg
gagtgccaggctctgccagatgaggaggatgatgggtttcggtgcttgtcagtttgtaac
cagaaagaagacagcggtgtgtcgctgctgcagctgatcggtgatcctcctccagagaag
atcctggaggtggacggcccggacaacagccccgcctacctgttcgggccggagtccgcc
acgggccagctggcccgcgcccacttccccaaccccttctacaggaacttcgccctcatc
ttcagcctgaagcccacctccgatgacggcggcatcatcttctccatcaccgactcttcg
cagcagatcatgcaccttggcgtcaagctgtcggccgttcagggatcgaagcagaacgtt
gttttgttctacagcgaggccggcgcccggcagtccaaagaggcggccaggttccacgtg
ccgtccatgacaaacgcctggaaccgcttcgctgtggctgtgaaggacgacaaggccatg
ctgtacctgaactgtgacgtggagccgcaggtgatgctgatggcgcgatcggcgagggag
ctggtgctggagtcggggtctggggtgtttgtgggccaggctggaggggagcatcctgac
aaatttaagggtgccatcagcgagctgcgggtggtgggagaccccagcgccgcagcgcga
ttctgcgaggaggacgacgactccgatatggcttcaggagaaggaagtggctacggagaa
accagacggccaaaacctttcagtgagaaacctcaacagacgacagccgttgagtctctt
cctccaatgcaacagccgccgctggagcggaccgtgcagagggcacaagcaggtgcagcc
gctgctaaaggagaaaagggcgacagaggggacagaggagagaaaggagatcaaggcccg
acggggccgaagggagacacaggctccggctcccaagggggaatccgcggactaaaggga
gaaccaggtgaaaaaggagcaaagggcagtgcaggttttggatatccgggttcaaagggt
gaaccaggccctcccggaccaccagggccccctggatctcctggacccacaacacagtat
tcagctgatgggtcgattgtttcgaaggttcctgggccgcgcggaccgcctggaccggca
ggtcctcaggggccacccggagaagatggagaaccaggtgaccccggtgaagatggaaaa
actgggcctcagggacctccagggtttccaggaactccgggtgacgcaggagttaaagga
gagaagggcgaccgtggagagggccagcccggccccagaggacccccagggcctccagga
ccgccgggtacaggatacagatctacattcgaggacatggaggcctctggattccctgat
atggtctccgttcggggacttccaggtcccccaggtcctcccggtcccccaggtcctcct
ggtcttaactcagcaagcacgtccgtgaactctggagctgttggacctccaggaaaagat
ggagcacctggccaacctggtctgcctggtttacctggtgctgatggtcttccaggagct
cctggccccaggggagaaaagggggattcaggtgatcttggactcccaggagcaattgga
caaaagggatctctaggggaacctggtttaccgggacctacaggagagcctggactggct
ggtctgccaggacccatgggaccagttggtcctcctggaccacctgggcctccaggacca
ggtcatcgggttggatttgatgacatggaggactccagtgggattttcactaatggactg
cctggtgtcagaggaccagaagggatacagggacctcctggtttacctggacaaccaggt
aaacccggtttcccaggtactgaaggtccaaagggtgagcagggtctggcaggaagagac
ggactaccaggcctggacggcttcccaggaccgccgggtcaaaagggtgacagaggagac
aaaggagagacgggtgagcccggtcgagatggaaccggactcccaggctcacctggtcca
cctggaccaccgggacaaataatctaccagccatctgacaacggagtggccggtttacct
gggagagctggatttcctggtccagttggaccgaagggggacagaggtgacccaggttca
ccaggttatggcctgaagggtgaaaaaggggagccaggcttgatgattggaccagatgga
aatcctttgtatctgggaggcctaacaggcaccaagggagacagaggactgccaggacct
attggaccttctggccctcaggggcctcctggactgaaaggtgaaataggaatgccagga
agacccggtcgtccaggtgtgaacggatacaaaggtgaaaaaggagagtcaggaacgggt
gcaggttatggctacccgggagttgccggcccaccaggacctccaggacctcctggacca
ccaggtccagccattgctctagatcgctttaatcgctttgatgaaaactcaaggggttac
caagccgtaaagggagaaaaaggagagcgtggcgaccgtggatctcctgggatcccaggc
actgcgtcaaactttgatatctacgcatttaagaatgagctgaagggagaccagggagat
ccgggagtgaagggggagaaaggagagccaggtggcggatactatgacccacgttttgga
ggaccagtgggcccaccaggacctccaggaaacccaggattaccaggtccaaagggagag
tccatagctgggcctcctgggccaccaggaccttctggaccaccaggtgttggctatgat
ggccgtccaggtccagcaggaccacctggacctccaggacctcctgggaatccctcattt
tctggaacatacagacctaattatcctgtcagcgttcctggacctcctggtccgccaggc
ccacctggaagccctggtccctcctctggggtgacggtgttgaggtcatatgacatcatg
attgcgacggccaggcagcagccggagggaaatctcatttacatcctggacaaagcagac
ctctacctgagagtgcgcgatggacttcgacaagtcctcctcggagattacagaaccttc
tttggagatctgggcaacgaggtggcagaagtgcagcccccaccggtggtcgtgtacccc
cacactccagaacggacctccaacaacggagcgggtcattactcccagagcagcgtggtt
atccgacccgctgagcccccgctgcggcagcccagcacccccgtggcgccagctgctgac
tcgtcagaatcaggactccacctcgtagcgctgaacgcacctcagaccggcaacatgcga
gggattcgcggggcagacttcctgtgcttccagcaggctcgcgctgttggtctgaaggga
acgttcagagctttcctgtcctccaagcttcaagacctctacaccatcgtccgcaggtcg
gacaggaatggattccccatcatgaacctgaagaaccaagtgttgttcagcagctgggag
tccatcttcagtgaggacagcaacaaaatgagggagaatgtatcgttatactcgtttgac
ggcagagacatcctcagggacagtgcatggccagagaagatggtctggcacggatcgagc
aaaaagggccaccggcaaatggatcattactgtgaaacgtggcgggcgggcgagcacgct
gtgacgggcctggcgtcgtccctgcagagcggccgcctcctgcagcagacgcccagcagc
tgctccggctcctacatcgtcctctgcatcgagaacgccttcacgtcgccctacaaataa
DBGET
integrated database retrieval system
