Gambusia affinis (western mosquitofish): 122839992
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Entry
122839992 CDS
T07758
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122839992 (pms1)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
122839992 (pms1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HMG_box_2
HATPase_c
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
122839992
NCBI-ProteinID:
XP_043988009
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All DBs
Position
LG11:complement(28883298..28895950)
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AA seq
862 aa
AA seq
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MKQLPADTVRLLSSSQVVTSVVSVVKELMENSLDAGASSVDVKLENFGLDRTEVRDNGCG
IKAADAPVMAVRHFTSKISSHEDLERLETYGFRGEALGSICAVAEVTVTTKTEEDDVSTQ
YTLDSSGGIVSQRPSHLGAGTSVSVAKLFGKLPVRRQFFSSVRKRKEEVRKVQDLLMAFA
VIKPELRLTLAHNKVVVWQKAKVADHRSALVATLGASTVANLLPVHQEQQEMVLDGFLPK
PGADLSLTSSSTSDKTFIFINKRPVQQKDILKLLRRHHSSQYPDDAARHRFPVLLLNITV
CPSSLDVNVTPDKTQVLLHNKEAVLAAVEALLVSLYGFRPEKQPDPEKQPDPETLPPAAG
CVETGQKTESRKVSDDDAGQSAALQRQASSCSSSSSMADDWIVNQSGFSLCDDEATRSRP
QSAEPGPEEPRQPQVSAEAWSRGTALTDPASGEPLRPVSIHRPDPEVKRSGNAITEKRAA
VTPYNMISSRALKAPPSAASLFEKEIRSEVLMERPAASLQEVSAAVQNRWENLGDEGRKR
FEEKARKSQDLHDQRTRLAAAAAPGAPADRPLGAAKLQAQKRKAPLSNQQLLDELFSAQP
QKKKKAPPPKPWQPLPCSMAVLRQRLRRLSAQSGATGPRGLHPVGRLASQNAWLILCGGR
RLMLLNPFRAEEALLFQRLQQDHILPAARLQNPLLLTDRNLGAAEFETLCSMEKGAAEPD
GSVFFSDPRLVANGFRIKLSPAERHLEATAVADCVPFLGLEDLKEVLTAVLRRKAATVPQ
SRPLKVTNYLKAEAVRLARQLPSDLCGEEVEELLQRTERRLGGTDRTCIHGRLFLQHLAD
VPSTQQEAGAGLTAPSNTHSAE
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcttcctgcagacacggtgcggctgctgtccagctcgcaggtcgtcacgtct
gtggtgagcgtggtgaaggagctgatggagaactccctggacgctggcgcctccagcgtc
gatgtgaagctggagaacttcggcctggatcggaccgaagttcgagacaacggctgtggg
atcaaagcggcggatgctccggtgatggccgtccgacatttcacctccaagatcagcagc
catgaagacctggagcgcctggagacgtacggcttcaggggcgaggcgctgggctccatc
tgcgccgtggccgaggtcaccgttaccactaaaacagaggaggacgacgtcagcacgcag
tacaccctggactccagcgggggcatcgtctctcagaggccgtcccacctgggtgcagga
acgtcggtgagcgtggcgaagctgttcgggaagctgccggtgcgacggcagttcttctcc
tccgtcaggaagcgtaaggaggaagtgaggaaggtccaggacctgctgatggccttcgcc
gtcataaagccggagctgcggctcacgctggcgcacaacaaggtggtggtttggcagaag
gccaaagtggcggaccacaggagcgccctggttgctacgctaggagctagtacggtcgct
aacctgctgcccgtccaccaagaacagcaagagatggttctggacggttttcttcccaaa
cccggagctgatttgtccttaacgagctcctctacctctgataaaaccttcatatttatt
aataagcgtcctgtccagcagaaggacatcctgaagctgttgcgtcggcaccactcttct
cagtatcctgacgatgcggctcggcatcggttccccgtcctcctgctgaacatcacagtt
tgtccttcatcgctggatgtaaatgtgacgcctgataaaacccaggttctgcttcataac
aaggaggcggttctggccgccgtcgaggctctgctggtttctctttacggttttcgtcct
gaaaagcagccggatcctgaaaagcagccggatcctgaaactcttcctcctgctgctggt
tgtgtggagacgggtcagaaaacggagagcaggaaggtgagcgatgacgatgccggccaa
tcagccgccctgcagcgccaggcctccagctgcagctcctcttcctccatggcggacgac
tggatcgtcaaccaatccggtttctccctctgcgacgacgaggcgacccgcagtcgaccc
cagagcgccgagcccggcccagaggagccgcggcagccacaggtgtccgccgaggcctgg
agccgcggcacggcgctgaccgacccggcatcgggagaaccgctgcggcccgtctccatc
caccggccagacccagaggtcaagaggtcaggtaacgccataacggagaaacgggccgcg
gtgacgccgtacaacatgatcagcagccgcgccctgaaggcgccgccgtccgccgcctca
ctgttcgagaaggagatccggtccgaagttctgatggagcgaccggccgccagcctgcag
gaggtcagcgccgccgtccagaaccgctgggaaaacctgggagacgaaggcaggaagagg
tttgaggaaaaggcgaggaagagtcaggacctccatgaccagaggaccaggctggcggcc
gctgcggcccccggggccccggccgatcggcccctgggggccgctaagctccaggctcag
aagcgtaaagctcctctgtccaaccagcagctgctggacgagcttttctccgcccagccc
cagaagaagaagaaggctccgcccccaaagccgtggcagccgctgccctgcagcatggcg
gtgctgcgccagcggctgcggcgcctgtcggcccagagcggtgcaacggggccccggggc
ctccacccggtgggccggctggcctctcagaacgcctggctgattttgtgcggcgggcgg
cgcctgatgctgctcaacccgttccgggcagaagaagccttgctgttccagcggctccag
caggatcacatccttcctgctgcccgcctgcagaacccgctgctgctcaccgacaggaac
ctgggcgccgcggagtttgagacgttgtgcagtatggagaaaggcgcggcggagccagac
ggcagcgtcttcttctccgacccccgactcgtcgccaacggcttcagaatcaaactcagt
ccagcagagcgccatctggaagcgacggccgtggcggactgcgtgcctttcctgggcctg
gaggacctgaaggaggttctgaccgccgtcctccggaggaaggccgccacggtgccgcag
agccggccgcttaaagtcaccaactacctgaaggccgaggcggtccggctcgcccgccag
ctgccttcagatttatgtggtgaagaggtggaggagctgctgcagcggacggagcggcgg
ctgggcggaaccgaccggacctgcatccacgggcggctcttcctgcagcacctggccgac
gtcccgtccacacagcaggaggccggggctggactcacagcgccgagtaacacacacagc
gccgagtaa
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