Gambusia affinis (western mosquitofish): 122840718
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Entry
122840718 CDS
T07758
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03013
Nucleocytoplasmic transport
gaf03015
mRNA surveillance pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122840718 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
122840718 (acin1a)
03015 mRNA surveillance pathway
122840718 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122840718 (acin1a)
03041 Spliceosome [BR:
gaf03041
]
122840718 (acin1a)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122840718 (acin1a)
Spliceosome [BR:
gaf03041
]
Complex C
Other components
EJC/TREX
122840718 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
122840718
NCBI-ProteinID:
XP_043989243
LinkDB
All DBs
Position
LG12:7935390..7953235
Genome browser
AA seq
1679 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQKTSTPH
VGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYETNEQEGHTQVNNSTPCP
PPAQEVTPAAQLKPPGPSDGEGFFGSVNAGQGNRNQEADVSSPPASGSMTMRAPASEQRS
ERGSASSEVAGDSDDDDSEEDGDDDEDWGSSAPRRSLREPARVPAARSGAARHPQPQQQH
IPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPPVAAARHSPSSSSSGSSSSGSRS
SSPEPQRSADRKPGPLTLLARKMESEGAFSGGGWHGPDGEGDRQDSGSPSPMAFPGKGPL
DGLGSAGVIPGTHSAHIQLSGGLRKVAVAEERERERAIEMERQEKQRQLELAAEEERQRA
IALERERERIERQQALEREEREKREREREEALAREREERERALELERQKEHERQRALEEE
RLLKERKEKEKREREEMERAVERERAKERERLERERALEAERREKERLERERALEAERRE
KERLERERVEREKALEKERLEKERIERERALEKDRLEKERLEREKALEQERLEKERIERE
KALELELLEKERIEREKALEQERLEKEKIEREKALEQERLEREKALEQERLEKERIEREK
ALEKERLEKERIEREKALAQERLEKERIEREKAAELERIEREQALEQERIEKEKSLEKEK
KEKEREQALERERREREKKEQAEREAALERERMAKERAEKERKEQIEREKALELEELERA
QALEKEKERAQEQERMEKQEQQKKALHQEKERDANLSAPERENAHAPVAQSESQPSDSGS
TLLSPQSSSKKFRFLRDSPARPQSGSIVIKRPRTFSDTPQPRASTVTTPTGVGDQRPGGT
LSSINQEDAQIQSKQDVGAVSEGSTGTSSDGLNANRTAAHPGSREETSASTVEATLPKTE
ESLEGKDERKDSSISEDKSGREAKKEEKTARRRSSSNDSSSTDSDSGSSSSRSSSSSSSS
QDKAVSTSRNRQEGKHERGSSPLPMEAAESQSEDSKERPKASHPEKELPVDGINAADGDI
HTTKQTDANRKRKHSEMEEEEEEDEEQQRQEKEASTADPEKSSESIEETPKAFSGRKISL
GSSKQSPGNAETEHESGAMTGRKRRWGSSTAVTAKKPSISITTESLKSLIPDIRPPGGQE
AVVDLHPEEAALSGAEDEERERPDQDLQIRRTVTQVVPVESQENGQKEAKRMRREDFEED
DSQVEGETVAAHEEQMDTSLPATVETQSPTLASQDTETNTVTPSDTLIRRSISQQKTGVS
ITIDDPVRTARQPSPPRGQVSSIVHIWNLVRPFTLGQLKELLSRTGTLVEDGFWIDKIKS
HCYVTYSSTEEAVATRAALHGVKWPQSNPKVLRVDFCQQDELDYQKNSSGAGDRPGGGED
TGPAAPGRGRTSGLPSLLPERDQWAEREREMERRERARAEREWDRDKVKEFGKPGEEREG
GPRRSPSRERRRKERGKSKEKKMEKKAEDPPAKLLDDLFRKTKAVPCIYWLPLTEEQFRQ
REAARAEEVKEREERRKEREKRRKEEVEEEEKKKEEERKERTKAAGTSAGNRSEGEKDKN
REQERDRDRGRDRDRDRERDRDRERENDKRRDGYRRSGGGGAGSSRRSRSRSEPRDRRR
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagtccctccgtgtagcg
gacctcaaagcggctctggaggagagggggctgtcgaaaagcggacagaagaatgctctc
attaaaaggcttaaaggggctctcatgctggagaatttgcagaagacctccactccacat
gtcggactgcagcctaactcccagattggcgaggaaatgagccagaacagttttatcaag
cagtatctggctaagcaacaagagctcctgaggcagcgtctggagagagaggctcgtgaa
gcgtatgaaacgaacgagcaagagggccacacacaggttaacaacagtacaccgtgccct
cctcctgcccaggaagtcacaccagctgctcaacttaagccccctgggccctcggatgga
gagggattctttggttcggtcaatgcaggacaggggaacaggaatcaggaggcagatgtg
tccagcccccctgcttccggctctatgaccatgcgagctcctgcctcagagcagcggtca
gagcgaggttctgcctccagcgaagttgcaggcgacagcgacgacgacgacagcgaggag
gacggcgacgatgatgaagactggggcagcagcgccccaagaagaagcctccgagagccg
gctagagtgcccgcggcgcggtccggtgcagcacgtcacccgcagccccagcagcagcac
attcctccccttttgtctcctcagctccggcagccaacaccacctccttccccacctcca
gagttatcgttccccttacctgacacccccaaacagagcccaccgagtccccctgttgcc
gcggccagacactcgcccagctcctccagctccggctcttccagcagcggcagtcgcagt
agcagcccagagccgcagagaagtgccgaccgtaaacccggtccacttacccttctggca
cgtaaaatggagtccgagggtgccttctctggaggaggctggcatggccctgatggcgaa
ggtgataggcaagacagcggttcaccttcacctatggcttttcctggcaaagggcctcta
gatggtttggggtccgccggagtgattccaggcacacattcagcccacatccaactatct
gggggtttacgcaaggtcgctgtagcggaggaaagagagagggagcgagcgattgagatg
gaaagacaagaaaagcaaagacaacttgagctggcagcggaggaagaacggcaaagagcc
atcgcactggaacgggagagagagaggattgagcgccagcaagctttagaaagagaggag
agagaaaaacgagagcgagagagggaagaagctttggctagagagagggaggaacgagag
agggcattggagctagagcggcaaaaagagcatgaaagacagagagccttggaggaagaa
cgtctgctgaaagagaggaaggaaaaggagaaacgggagcgagaggagatggagagggca
gtggaacgagaaagagccaaggagagagaacggctagagagagagagagctctggaggct
gagcgaagggagaaggaaagacttgagagagagagggctctggaggctgagcgaagggag
aaggaaagattggagagggaaagggtagaaagagaaaaagctttggagaaggagagattg
gaaaaagaaagaattgagagagagagagctctggagaaggacagattggaaaaagaaagg
ctagagagagagaaagctctggagcaggagcgattagaaaaagagaggatagaaagagag
aaagctctagagctagaactattggaaaaagagaggatagaaagagagaaagctctagag
caggagagattggaaaaagaaaagatagagagagaaaaggctctagagcaggaacgatta
gaaagagagaaagctctagagcaagaacgattggaaaaggaaagaatagaaagggagaag
gctctggagaaggaaagattagaaaaggaaaggatagagcgagaaaaagctctggcacag
gaacgattggaaaaggaaagaatagagcgtgagaaagctgctgagttggagaggattgag
agagaacaggccttagagcaagaaagaatagaaaaagaaaaatctctagagaaagaaaag
aaggaaaaagaacgagaacaagcattggagagagaaagaagagagagggagaaaaaggag
caggctgagagagaggcagctctggaacgggagaggatggcgaaagagcgagctgagaaa
gaaaggaaagagcagattgagagagaaaaggccttagagttggaggaactagaaagagca
caggccctggagaaggagaaagaacgagctcaggaacaggaacgaatggagaagcaggag
caacagaagaaggcactgcatcaagaaaaagagagagatgctaacctcagtgccccagag
cgtgaaaatgcccatgccccggtggcccagagtgaatcccagccctcagactctggttcc
acacttctttctccgcaatcgtcgtctaagaagtttcgcttccttagggactccccagct
cgacctcagtccggttctattgtcatcaagcggcctcgtacattttctgacaccccccag
cctcgggcatccaccgtcactacaccgactggcgttggggatcaaagaccaggaggaacc
ctgtcctccatcaaccaggaagacgcacagattcagtccaagcaggatgttggcgccgtg
tccgaaggctctacagggactagttccgacggactgaacgccaaccgtactgcagcccac
ccgggttccagagaagaaacatctgcatctacggtggaggctacattgccaaagaccgaa
gagtctcttgaggggaaggatgaaaggaaagactcttcaatttctgaggataaaagtggc
agagaggcaaagaaagaagagaaaacagcaagacggagatcatcgtcaaatgactcctct
tccacagattcagactctgggtcttcgtcttctcgatcatccagttcatcctcatcttct
caagataaagcggtctccacctccaggaatagacaggaggggaaacatgaaagaggctca
tcaccactgccgatggaggcagccgagtctcaatctgaggattcaaaggagcgcccaaag
gcctctcatcctgaaaaagagctgcctgtagacgggattaacgcagcagatggagacatt
cacactacgaaacaaacggatgcaaacaggaagagaaaacacagcgagatggaagaagaa
gaagaagaagatgaggaacaacagaggcaggagaaagaggcttccacggcggatccagaa
aagtcctcagagtccattgaggagacaccgaaggctttctccggacgcaagatctccctc
ggcagcagcaaacagtctccaggcaacgcagagaccgaacatgagtcgggggccatgaca
ggtcgcaagaggaggtggggctccagcacagccgtcactgccaaaaaaccttccatcagc
atcaccactgaatcactcaagtccctgatcccagacatcaggccccctggaggccaggag
gctgtagtggatctacatcccgaagaagccgccctgtctggggccgaggatgaagagcgg
gagcgccccgaccaggaccttcagatccgacgcaccgtcacgcaggtggtgcccgtcgag
agccaagagaacggacaaaaagaagcgaagagaatgaggcgggaagactttgaggaagac
gattctcaggtagaaggggaaaccgtagcggcccacgaggagcagatggacacgtctctc
ccagcaaccgtggaaacccagtcgccaacactagcaagccaagatactgaaaccaacact
gtgacacccagcgacaccctcattcgtcgctccatcagccagcagaaaacgggcgtttcc
atcaccatcgacgacccggttcgcacagccaggcagccctcgccgcctcgaggccaagtc
tccagcatcgttcacatctggaacctggtaaggccgttcacactcggccagctgaaggag
ctgctgagcagaaccggcactctggtggaggacggattctggatcgataaaatcaagtcc
cactgttatgtcacttattcgagtaccgaggaggcggtcgccacccgggcagctcttcat
ggagtgaaatggcctcagagcaacccgaaggttctcagagtagacttctgccagcaggat
gagttggactaccagaaaaactcctcgggagcaggcgaccgaccgggaggaggagaggac
acgggacccgccgccccgggacgcggacggacgtcgggcctgccgtcacttctccccgag
cgggaccagtgggcggagcgcgagcgggagatggagcgccgagagcgggcgcgggcggag
cgagagtgggaccgagacaaggtgaaagagtttgggaaacccggagaggagagggagggc
ggcccgcgaaggtctccgtccagagagagacggcgaaaagagagggggaagagcaaggag
aagaagatggaaaagaaagccgaggatcctcctgcaaagctgctggacgacttgttccgc
aaaactaaagcggttccctgcatttactggctgcccctcacagaggagcagtttcgtcag
cgagaagcggctcgagcggaagaggtgaaggagcgcgaggaacggcggaaggagcgcgag
aaaagacgaaaagaggaagtagaggaggaggagaagaaaaaggaggaagagcgcaaggag
agaacgaaagccgcgggtacctccgccggaaaccggagcgagggtgagaaggacaagaac
cgagagcaggagagggacagagaccgaggtcgagacagagaccgggacagggagagggac
agagacagggagagggagaacgacaaacgcagggacgggtaccgtagatccgggggcggc
ggagcgggctcgagccggcgctcgcgcagccggagcgaaccaagagacaggaggcgctga
DBGET
integrated database retrieval system
