Gambusia affinis (western mosquitofish): 122840806
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Entry
122840806 CDS
T07758
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122840806
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122840806
09142 Cell motility
04820 Cytoskeleton in muscle cells
122840806
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122840806
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122840806
Exosome [BR:
gaf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122840806
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122840806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122840806
NCBI-ProteinID:
XP_043989419
LinkDB
All DBs
Position
LG12:complement(13149765..13173482)
Genome browser
AA seq
1669 aa
AA seq
DB search
MAFKVTFLMFFTSWWIIFLVIHVQLLKAGKLEGPCQGRDCSQCVCHPAKGARGPPGKPGK
QGTQGPMGQRGRDGSQGEKGRVGTAGSHGLQGPQGDRGLTGAPGFTGHEGFPGHPGAAGE
PGLPGVDGCNGTRGQPGLDGLPGLDGLHGPPGPKGAKGSKGMPNYSGALPGPPGERGRDG
DPGQTGSPGNIGPKGLRGLPGLRGPKGVEGHKGVKGPHGDPGRSPRGEIGEQGPPGPPGP
PGPEEQKGYPSEYYFLKGEKGNKGPPGPCGPKGHRGIYSSSQTGPKGEKGILGFPGDRGS
PGRPGGDGLTGYEGDPGDKGLPGLIGRIGEKGWPGDPGPPGFSQFLNESAVRGPKGDRGY
PGARGIPGEPGHMGMPGPPGPPGVPDSHGRPGQPGDPGEKGEKGEPGTYDSNEILFTLGP
KGVKGHQGERGPDGCSGPPGCGNYYCEPGSPGEPGEDGPKGFSGKKGLKGVKGCPGECTC
VHTLGAVGPPGPPGYPGSLGFPGAPGLPGDPGPRGSDGPRGPDGTYGFTGLKGRKGEKGD
TYGRGSKGGKGDRGEPGYAGPLGRTGEPGEDGFPGPVGEPGPPGSGYVGRPGPRGYAGPP
GPKGFPGPLGQPGPGFPGLKGLPGLQGNQGYPGIPGVPGRPGPPGETDPCCHEGHIGPPG
PKGEPGLPGVQGQPGRDGYPGTPGQQGSKGIKGDDGETLTGPPGSSGANGDPGDHGPTGL
SLDGPDGLPGSPGPHGRKGDPGDILSAWPGSIGPPGPPGAVGPSGIPGIPGHPGSPGLEG
PPGPQGHKGDPGDSGDLGDTGAQGPPCTVCDVVGTPGPPGLPGGPGEQGVPGYPGQKGVK
GDVGPPGRGQKGLKGNPGIPGPPGPAGPRGVVGPPGDPGIHGLQGQKGEKGLPGTPGSRS
RPGNPGPPGQPGEKGERGFPGRYGNTGDPGYPGRKGSTGPVGFPGTCSIVNVIKGSPGLS
GRRGPPGQPGFAGYKGSTGMPGDVGPDGWPGSQGLKGFAGIPGREGLSGLPGLQGIKGFP
GPRGYSGNTGDQGDPGPPGQIGIPGLPGFSGVKGNKGQSYEIPGPKGFKGLPGEIGQSAL
TGSPGDPGDLGPRGRQGQPGRPGVAGETGRQGGPGSPGSRGPPGRQGIRGPPGDVGVVGP
PGPPGPWGNPGAPGTPGQDGLNGLRGLKGMKGADGHATPGPRGQDGLPGAKGTRGISGPP
GDTIPGVKGQTGPPGNTGFPGIPGTPGRPGKVCQNSLQGPEGDRGYEGLPGPSGPPGPPG
PPGGSISYKGDSGPDGHRGPPGYWGNKGEPGPPGPPGHRGSPGPKGEKGPDGPRGLLGRK
GQQGIPGPQGCKGEIGPIGEPGVKGQPGDLITVGLRVPPRGPPGPKGVSGSVGSQGYGGH
PGPFGQTGQKGLKGSVGFPGIPGPPGFDGPHGDPGDVGERGYPGPQGAPGPPGDTGEPGH
RRQLRSDFLLVIHSQSVQVPQCPAGSNQLWVGYSLIYLEGQEKAHTQDLGQPGSCLPVFS
TMPFSYCDKDACYYSSRNDKSYWLSTTAPISMMPLFGQEISLHISRCVVCETSSPAAPFH
SQDQAIPPCPDGWKSLWTGYSFLLHTGAGDEGGGQSLASSGSCLRDFRTHPFIECQGAQG
SCHYFSNLYSFWLTTVRDREEFVPVKPGTIKAADQQRYKASRCNVCLRD
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggcattcaaagtaactttcttgatgttttttacctcctggtggatcattttcctggtc
atccatgtgcagcttctcaaagcagggaaacttgaaggcccatgtcaaggcagagactgc
tctcagtgtgtgtgtcaccctgctaaaggtgcaaggggacctccagggaaaccaggaaag
caaggtactcagggtccaatgggacaaagaggacgagatgggtctcaaggggagaaggga
agagtgggcacagcaggatcacatggcctacagggtcctcaaggagaccgtggtttgact
ggtgctcccggtttcacgggtcatgaaggatttccaggccacccaggagcagcgggtgag
cctggtttaccaggagtcgatggctgtaatggaacaagaggtcaaccaggactggatggt
ctgccaggactggatggcctccatgggccacctgggccaaagggtgctaaaggaagcaaa
ggaatgcctaattatagtggtgctcttccaggtcctcctggtgaacgaggtagagatgga
gatcctggtcaaacaggaagcccagggaacattgggcctaagggtcttcgtggccttcct
ggacttcgtgggcctaagggtgtagaaggtcataaaggtgtgaaaggaccacatggtgac
cctggaagatcacctagaggtgaaattggtgaacaaggcccacctggaccacctggccca
cctggaccagaggaacagaaaggatatccttcagaatactatttccttaagggtgagaag
gggaataaaggtcctcctggaccatgtggaccaaaagggcatcgaggtatctacagttct
agtcaaacgggacctaaaggagagaaaggaatcctgggatttccaggggatagaggtagt
cctggacggcctggtggagacggattgactggatatgagggtgaccctggagacaaagga
ctgccagggctcattggaagaataggagaaaagggttggccaggggatccaggtccccct
ggtttttctcaatttcttaatgaaagtgctgtgagaggtcctaagggagaccgtggatat
ccaggtgcacgtgggatcccaggagagcctgggcatatgggtatgcctggccctccaggc
ccaccaggtgtaccagactcacatggccgacctggtcaaccaggtgaccctggtgaaaag
ggtgagaagggagaaccagggacatacgattcaaatgaaatacttttcactctgggacca
aagggagtaaaaggacatcaaggagaaagaggccccgatggttgctctggtccaccagga
tgtggaaattattactgcgagcctggttctccaggggaacctggtgaagatggacccaaa
ggattttctggaaagaaaggcctaaaaggagttaaaggttgtccaggggaatgtacatgt
gtgcatactttgggggctgttggcccacctggtccacctggttatccaggatctctagga
tttccaggggctccaggacttccgggggatccgggacctaggggaagtgatggcccaaga
ggaccagatggcacatatggtttcacaggtctaaaaggaagaaagggtgagaaaggtgac
acatatgggaggggttctaaaggtgggaaaggggacagaggagaaccaggatatgctggt
cctttaggacgaacaggtgagcctggagaagatggcttccctggtccggtaggagaacct
ggtccaccgggttctggctatgtgggacgccctggacccagaggttatgcaggtcctcca
gggcccaaaggattccctggcccccttggtcaaccaggtcctggatttcctggcctgaag
ggattacctggacttcaaggaaatcagggatatccagggattcctggagtcccaggacga
ccaggtccaccaggtgaaacagatccatgctgtcatgaaggccatattggaccaccaggg
cctaagggtgagccagggttaccaggtgttcagggtcaacctggaagagatggctatcca
ggaactccaggacaacaaggatctaaagggataaagggagatgatggagaaactctgact
ggaccgccaggatctagtggtgcaaatggagatccaggtgaccatggtcccactggcctt
agcctggatggccctgatggtcttcctgggtcaccaggaccccatggcagaaaaggggac
ccaggagacatcctttcagcttggccaggttcaattggtcctcctggaccaccaggagct
gtggggccatccggaattcctggaatccctggacatccaggatctccaggattagaaggc
ccaccaggaccccaaggtcacaagggagatcctggggacagtggagaccttggagatact
ggtgcccaaggtccaccatgcactgtttgtgatgtagtaggtacgcctggacctccagga
cttccagggggccctggtgaacaaggagtgccaggctaccctggtcagaaaggggtgaag
ggagatgttggtccacctggtcgaggacagaagggtttgaaaggtaatcctggtattcct
gggcctcctggcccagctggaccaagaggtgttgttggtcctccaggagaccctggtatt
catggcttacagggacagaaaggtgaaaaaggcttgcctgggacgcctgggtctagaagt
aggcctggcaatcctgggcctccagggcaaccaggtgaaaagggagaaagaggttttcct
ggtcgttatggaaatacaggtgatccaggatatcctggtagaaaaggctcaactggaccc
gtgggattcccaggaacatgttcaattgtcaacgtgataaaaggttctcctggactttct
ggaagaagggggcctcctggtcagccagggtttgcaggatacaaaggcagcacaggcatg
cctggtgatgtggggcctgatggatggccaggatcacaaggattaaaaggatttgctggt
attccaggtagagaaggattatcaggcctccctggacttcaagggattaaaggattccca
ggtccaagggggtattctgggaatactggagatcagggagatccagggccaccaggacaa
attggtatccctggtctcccaggattttctggtgtaaaaggtaataaagggcagtcttat
gagatacctggcccaaaaggattcaaaggattacctggggagattgggcaaagtgcactt
acaggaagtcctggggatccaggtgacctaggacccaggggaaggcaagggcaacctgga
cgtccaggggttgctggggaaaccggaagacaaggagggccaggctctcctgggtcccga
ggtccaccagggcgtcaaggcattagaggtcctccaggtgatgtaggagttgtgggacca
cctggcccccctggcccatggggcaatccaggtgcccctggaacaccaggtcaggatgga
ttgaatgggctaagaggtctgaaagggatgaagggagcagatggccacgccactcctgga
cctcgtggacaagatggtttacctggagccaaaggcacccggggcatctcgggaccgccg
ggggacactattccaggggttaaaggccaaactgggccacctgggaacacaggttttcca
ggaatcccaggaacacctggtagacctggcaaagtctgccaaaactcccttcaaggacct
gaaggagatagaggctatgaagggctcccaggaccctcaggtcctcctggtccacctggg
ccaccaggtggaagcatttcatacaaaggagactcaggaccagatggtcatcgtggacca
ccaggttattggggaaataaaggcgagccaggacctccagggcctcctggccacagaggc
agtccaggaccaaagggtgagaaaggtcctgatgggccaaggggccttctgggacgcaaa
ggtcaacagggcatccctggacctcaaggatgtaagggagaaattggtccaattggagag
ccaggtgtcaaaggtcaacctggtgatttaatcactgtaggtttaagggttcctccccgt
ggtcccccagggccaaaaggcgtttcaggaagtgtaggaagtcaagggtatgggggtcat
cctggtccttttggtcaaacaggacaaaaaggtcttaaagggtctgtgggctttcctggc
attccagggcctcctgggtttgatggtccccatggagacccaggtgatgttggtgagcga
ggataccccgggcctcaaggtgcccctggtcctcctggcgatacaggcgagcctggccat
agaaggcaacttagatcagactttcttttagttatccacagccagtcagttcaggtaccg
cagtgtcctgcaggtagcaaccagctgtgggtgggatacagtctcatctacctggaagga
caagagaaggctcacacacaagatctgggtcagcctggctcttgtctccccgttttctcc
accatgcctttctcgtactgcgacaaagacgcatgctactactcaagtcgcaatgacaaa
tcctattggctttccactactgctcctatatcaatgatgccactctttggccaggagata
agcctccacattagccgctgtgttgtgtgtgagacctcttcaccagcagcgccatttcat
agtcaagaccaagcaattcctccctgcccagatggctggaagagtttatggacaggatat
tctttccttctgcacacaggggcaggcgatgagggtggtggacagtcgctggcttcttct
ggtagctgcctcagagattttcgaactcatcccttcattgagtgtcaaggtgcgcagggt
tcctgtcactacttttccaatctttacagtttttggctaactactgtaagagatagagag
gaattcgtccctgtaaagcctggtaccatcaaagcagctgatcagcagcggtacaaggcc
agtcggtgtaatgtttgccttcgggattaa
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integrated database retrieval system
