Gambusia affinis (western mosquitofish): 122840806
Help
Entry
122840806 CDS
T07758
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04382
Cornified envelope formation
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122840806
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122840806
09142 Cell motility
04820 Cytoskeleton in muscle cells
122840806
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122840806
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122840806
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122840806
Exosome [BR:
gaf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122840806
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122840806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122840806
NCBI-ProteinID:
XP_043989419
LinkDB
All DBs
Position
LG12:complement(13149765..13173482)
Genome browser
AA seq
1669 aa
AA seq
DB search
MAFKVTFLMFFTSWWIIFLVIHVQLLKAGKLEGPCQGRDCSQCVCHPAKGARGPPGKPGK
QGTQGPMGQRGRDGSQGEKGRVGTAGSHGLQGPQGDRGLTGAPGFTGHEGFPGHPGAAGE
PGLPGVDGCNGTRGQPGLDGLPGLDGLHGPPGPKGAKGSKGMPNYSGALPGPPGERGRDG
DPGQTGSPGNIGPKGLRGLPGLRGPKGVEGHKGVKGPHGDPGRSPRGEIGEQGPPGPPGP
PGPEEQKGYPSEYYFLKGEKGNKGPPGPCGPKGHRGIYSSSQTGPKGEKGILGFPGDRGS
PGRPGGDGLTGYEGDPGDKGLPGLIGRIGEKGWPGDPGPPGFSQFLNESAVRGPKGDRGY
PGARGIPGEPGHMGMPGPPGPPGVPDSHGRPGQPGDPGEKGEKGEPGTYDSNEILFTLGP
KGVKGHQGERGPDGCSGPPGCGNYYCEPGSPGEPGEDGPKGFSGKKGLKGVKGCPGECTC
VHTLGAVGPPGPPGYPGSLGFPGAPGLPGDPGPRGSDGPRGPDGTYGFTGLKGRKGEKGD
TYGRGSKGGKGDRGEPGYAGPLGRTGEPGEDGFPGPVGEPGPPGSGYVGRPGPRGYAGPP
GPKGFPGPLGQPGPGFPGLKGLPGLQGNQGYPGIPGVPGRPGPPGETDPCCHEGHIGPPG
PKGEPGLPGVQGQPGRDGYPGTPGQQGSKGIKGDDGETLTGPPGSSGANGDPGDHGPTGL
SLDGPDGLPGSPGPHGRKGDPGDILSAWPGSIGPPGPPGAVGPSGIPGIPGHPGSPGLEG
PPGPQGHKGDPGDSGDLGDTGAQGPPCTVCDVVGTPGPPGLPGGPGEQGVPGYPGQKGVK
GDVGPPGRGQKGLKGNPGIPGPPGPAGPRGVVGPPGDPGIHGLQGQKGEKGLPGTPGSRS
RPGNPGPPGQPGEKGERGFPGRYGNTGDPGYPGRKGSTGPVGFPGTCSIVNVIKGSPGLS
GRRGPPGQPGFAGYKGSTGMPGDVGPDGWPGSQGLKGFAGIPGREGLSGLPGLQGIKGFP
GPRGYSGNTGDQGDPGPPGQIGIPGLPGFSGVKGNKGQSYEIPGPKGFKGLPGEIGQSAL
TGSPGDPGDLGPRGRQGQPGRPGVAGETGRQGGPGSPGSRGPPGRQGIRGPPGDVGVVGP
PGPPGPWGNPGAPGTPGQDGLNGLRGLKGMKGADGHATPGPRGQDGLPGAKGTRGISGPP
GDTIPGVKGQTGPPGNTGFPGIPGTPGRPGKVCQNSLQGPEGDRGYEGLPGPSGPPGPPG
PPGGSISYKGDSGPDGHRGPPGYWGNKGEPGPPGPPGHRGSPGPKGEKGPDGPRGLLGRK
GQQGIPGPQGCKGEIGPIGEPGVKGQPGDLITVGLRVPPRGPPGPKGVSGSVGSQGYGGH
PGPFGQTGQKGLKGSVGFPGIPGPPGFDGPHGDPGDVGERGYPGPQGAPGPPGDTGEPGH
RRQLRSDFLLVIHSQSVQVPQCPAGSNQLWVGYSLIYLEGQEKAHTQDLGQPGSCLPVFS
TMPFSYCDKDACYYSSRNDKSYWLSTTAPISMMPLFGQEISLHISRCVVCETSSPAAPFH
SQDQAIPPCPDGWKSLWTGYSFLLHTGAGDEGGGQSLASSGSCLRDFRTHPFIECQGAQG
SCHYFSNLYSFWLTTVRDREEFVPVKPGTIKAADQQRYKASRCNVCLRD
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggcattcaaagtaactttcttgatgttttttacctcctggtggatcattttcctggtc
atccatgtgcagcttctcaaagcagggaaacttgaaggcccatgtcaaggcagagactgc
tctcagtgtgtgtgtcaccctgctaaaggtgcaaggggacctccagggaaaccaggaaag
caaggtactcagggtccaatgggacaaagaggacgagatgggtctcaaggggagaaggga
agagtgggcacagcaggatcacatggcctacagggtcctcaaggagaccgtggtttgact
ggtgctcccggtttcacgggtcatgaaggatttccaggccacccaggagcagcgggtgag
cctggtttaccaggagtcgatggctgtaatggaacaagaggtcaaccaggactggatggt
ctgccaggactggatggcctccatgggccacctgggccaaagggtgctaaaggaagcaaa
ggaatgcctaattatagtggtgctcttccaggtcctcctggtgaacgaggtagagatgga
gatcctggtcaaacaggaagcccagggaacattgggcctaagggtcttcgtggccttcct
ggacttcgtgggcctaagggtgtagaaggtcataaaggtgtgaaaggaccacatggtgac
cctggaagatcacctagaggtgaaattggtgaacaaggcccacctggaccacctggccca
cctggaccagaggaacagaaaggatatccttcagaatactatttccttaagggtgagaag
gggaataaaggtcctcctggaccatgtggaccaaaagggcatcgaggtatctacagttct
agtcaaacgggacctaaaggagagaaaggaatcctgggatttccaggggatagaggtagt
cctggacggcctggtggagacggattgactggatatgagggtgaccctggagacaaagga
ctgccagggctcattggaagaataggagaaaagggttggccaggggatccaggtccccct
ggtttttctcaatttcttaatgaaagtgctgtgagaggtcctaagggagaccgtggatat
ccaggtgcacgtgggatcccaggagagcctgggcatatgggtatgcctggccctccaggc
ccaccaggtgtaccagactcacatggccgacctggtcaaccaggtgaccctggtgaaaag
ggtgagaagggagaaccagggacatacgattcaaatgaaatacttttcactctgggacca
aagggagtaaaaggacatcaaggagaaagaggccccgatggttgctctggtccaccagga
tgtggaaattattactgcgagcctggttctccaggggaacctggtgaagatggacccaaa
ggattttctggaaagaaaggcctaaaaggagttaaaggttgtccaggggaatgtacatgt
gtgcatactttgggggctgttggcccacctggtccacctggttatccaggatctctagga
tttccaggggctccaggacttccgggggatccgggacctaggggaagtgatggcccaaga
ggaccagatggcacatatggtttcacaggtctaaaaggaagaaagggtgagaaaggtgac
acatatgggaggggttctaaaggtgggaaaggggacagaggagaaccaggatatgctggt
cctttaggacgaacaggtgagcctggagaagatggcttccctggtccggtaggagaacct
ggtccaccgggttctggctatgtgggacgccctggacccagaggttatgcaggtcctcca
gggcccaaaggattccctggcccccttggtcaaccaggtcctggatttcctggcctgaag
ggattacctggacttcaaggaaatcagggatatccagggattcctggagtcccaggacga
ccaggtccaccaggtgaaacagatccatgctgtcatgaaggccatattggaccaccaggg
cctaagggtgagccagggttaccaggtgttcagggtcaacctggaagagatggctatcca
ggaactccaggacaacaaggatctaaagggataaagggagatgatggagaaactctgact
ggaccgccaggatctagtggtgcaaatggagatccaggtgaccatggtcccactggcctt
agcctggatggccctgatggtcttcctgggtcaccaggaccccatggcagaaaaggggac
ccaggagacatcctttcagcttggccaggttcaattggtcctcctggaccaccaggagct
gtggggccatccggaattcctggaatccctggacatccaggatctccaggattagaaggc
ccaccaggaccccaaggtcacaagggagatcctggggacagtggagaccttggagatact
ggtgcccaaggtccaccatgcactgtttgtgatgtagtaggtacgcctggacctccagga
cttccagggggccctggtgaacaaggagtgccaggctaccctggtcagaaaggggtgaag
ggagatgttggtccacctggtcgaggacagaagggtttgaaaggtaatcctggtattcct
gggcctcctggcccagctggaccaagaggtgttgttggtcctccaggagaccctggtatt
catggcttacagggacagaaaggtgaaaaaggcttgcctgggacgcctgggtctagaagt
aggcctggcaatcctgggcctccagggcaaccaggtgaaaagggagaaagaggttttcct
ggtcgttatggaaatacaggtgatccaggatatcctggtagaaaaggctcaactggaccc
gtgggattcccaggaacatgttcaattgtcaacgtgataaaaggttctcctggactttct
ggaagaagggggcctcctggtcagccagggtttgcaggatacaaaggcagcacaggcatg
cctggtgatgtggggcctgatggatggccaggatcacaaggattaaaaggatttgctggt
attccaggtagagaaggattatcaggcctccctggacttcaagggattaaaggattccca
ggtccaagggggtattctgggaatactggagatcagggagatccagggccaccaggacaa
attggtatccctggtctcccaggattttctggtgtaaaaggtaataaagggcagtcttat
gagatacctggcccaaaaggattcaaaggattacctggggagattgggcaaagtgcactt
acaggaagtcctggggatccaggtgacctaggacccaggggaaggcaagggcaacctgga
cgtccaggggttgctggggaaaccggaagacaaggagggccaggctctcctgggtcccga
ggtccaccagggcgtcaaggcattagaggtcctccaggtgatgtaggagttgtgggacca
cctggcccccctggcccatggggcaatccaggtgcccctggaacaccaggtcaggatgga
ttgaatgggctaagaggtctgaaagggatgaagggagcagatggccacgccactcctgga
cctcgtggacaagatggtttacctggagccaaaggcacccggggcatctcgggaccgccg
ggggacactattccaggggttaaaggccaaactgggccacctgggaacacaggttttcca
ggaatcccaggaacacctggtagacctggcaaagtctgccaaaactcccttcaaggacct
gaaggagatagaggctatgaagggctcccaggaccctcaggtcctcctggtccacctggg
ccaccaggtggaagcatttcatacaaaggagactcaggaccagatggtcatcgtggacca
ccaggttattggggaaataaaggcgagccaggacctccagggcctcctggccacagaggc
agtccaggaccaaagggtgagaaaggtcctgatgggccaaggggccttctgggacgcaaa
ggtcaacagggcatccctggacctcaaggatgtaagggagaaattggtccaattggagag
ccaggtgtcaaaggtcaacctggtgatttaatcactgtaggtttaagggttcctccccgt
ggtcccccagggccaaaaggcgtttcaggaagtgtaggaagtcaagggtatgggggtcat
cctggtccttttggtcaaacaggacaaaaaggtcttaaagggtctgtgggctttcctggc
attccagggcctcctgggtttgatggtccccatggagacccaggtgatgttggtgagcga
ggataccccgggcctcaaggtgcccctggtcctcctggcgatacaggcgagcctggccat
agaaggcaacttagatcagactttcttttagttatccacagccagtcagttcaggtaccg
cagtgtcctgcaggtagcaaccagctgtgggtgggatacagtctcatctacctggaagga
caagagaaggctcacacacaagatctgggtcagcctggctcttgtctccccgttttctcc
accatgcctttctcgtactgcgacaaagacgcatgctactactcaagtcgcaatgacaaa
tcctattggctttccactactgctcctatatcaatgatgccactctttggccaggagata
agcctccacattagccgctgtgttgtgtgtgagacctcttcaccagcagcgccatttcat
agtcaagaccaagcaattcctccctgcccagatggctggaagagtttatggacaggatat
tctttccttctgcacacaggggcaggcgatgagggtggtggacagtcgctggcttcttct
ggtagctgcctcagagattttcgaactcatcccttcattgagtgtcaaggtgcgcagggt
tcctgtcactacttttccaatctttacagtttttggctaactactgtaagagatagagag
gaattcgtccctgtaaagcctggtaccatcaaagcagctgatcagcagcggtacaaggcc
agtcggtgtaatgtttgccttcgggattaa
DBGET
integrated database retrieval system
