KEGG   Gambusia affinis (western mosquitofish): 122840845
Entry
122840845         CDS       T07758                                 
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
gaf  Gambusia affinis (western mosquitofish)
Pathway
gaf03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:gaf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    122840845 (ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gaf03019]
    122840845 (ndc1)
Messenger RNA biogenesis [BR:gaf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     122840845 (ndc1)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 122840845
NCBI-ProteinID: XP_043989521
LinkDB
Position
LG12:20752419..20761071
AA seq 669 aa
MFPSETSCWFIRKVIWWRAAASIAWSVLLLPPTTAVFVFLSKFSFLHPIQTISECLSLLM
SSCLIFSFILLGGVVIMVGFLNLEYYTVIPTIACSKIALLGQLLHPRQVVSSVAHCLMGV
IVGWCCAVTVGNRYKTLGCPCKSSDGVPQMGLNEYHLVFLLAGAFVGFSHSLLGVTHNIN
YVSFHAVQQYKYLHFKGSLPLVLKCSAIQAFYSIRNFAVAYFFLGYIPKTWICKTLNLHL
DSSVHRLDSITGLVDLSLLYHLWISATFLLFTWYITLLLFRIFVTEVYSFPVQPTFTQDP
HQCLPRVLTDQQPMILKFLALQDLALLSKHSPSRRGEVFSLSQPGGHPHNWNAVSRECLA
LLADLTQRLVAYHETVATNGRAKSLSSGSERKTSSDTSLTSCAEDLVSPRPTFLTKTPAS
VFARSFAGGPHSPLTAPFTPDLDSPFSSPTLRRFPGLVDQCSPWHGSVQSPHIMRRAPKL
WSTSAESQVSSSPPRSPASVPSPKQEPTKPSFVAQFLQNRKEQVKNFMAKRVLIMYLFNK
LPEASSQALFADSQAHIWALEALSYLVQASFTEDQFGVVQTTLPSILSSMLHLQEAVDRH
FKLPHASSKPVRSANSMEDFTYKTLRFALRATLKTAIYRITTTFGSHLNAVQMSAEHRKR
LQQFLEFKE
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgtttccttcagaaacaagctgctggtttatccgcaaggttatttggtggagagctgct
gccagcattgcctggtctgtcctgttgttgccgcccaccacggcagtttttgtgtttctc
agcaagttcagttttcttcaccccattcagactatttcagaatgcctgtctctgctgatg
agttcctgtttgattttctccttcatccttcttggtggagtggtcatcatggttgggttc
ttgaatttagagtactatacagttatcccgactattgcctgctctaaaattgcattgctg
ggtcagctgcttcaccctcgccaggttgtcagctccgttgcccactgcctgatgggagtg
attgtaggttggtgttgtgcagtcactgttggtaacagatataagacactcggctgccct
tgtaaaagtagcgatggtgttcctcagatgggactcaatgagtaccaccttgtctttttg
ctggctggagcatttgtcggtttctctcacagcctcctgggagtaacccataacataaat
tatgtctcctttcatgccgttcagcaatacaaatatctccacttcaaagggtccctgccc
ttagtgctgaagtgcagcgccattcaagcattttactctatcaggaacttcgctgttgct
tatttctttctgggttatatcccaaaaacatggatctgcaaaactctgaatcttcatttg
gacagctctgtccatcgtctggacagcataactggacttgtggatctgtccctcctctac
cacctctggatcagcgccaccttcctcctcttcacctggtacatcacattgctgctcttt
aggatctttgttacagaggtgtacagtttccctgtgcaaccaacttttactcaagatccc
caccagtgtcttcccagagttctcactgaccaacaaccaatgatcttgaagttcctagcc
ctgcaggacttggctctgctgtccaaacattctccatccagacgcggtgaagtcttcagt
ctcagccaaccaggtgggcatcctcataactggaacgctgtcagtagagagtgtctggct
ctgctggctgatctgacgcagagacttgtggcttatcatgaaaccgtagcaaccaatggg
agggccaaatctctgtctagtggcagtgaaaggaagacttcatctgacacatcattgacc
tcttgtgcagaagacctggttagtccaagaccaactttcctaaccaagactcctgcttcg
gtttttgcccgctcttttgccggaggtccacacagtcctctgacggcaccgttcactcct
gacctggacagccccttttcctcacccaccttgcggcggttccctggtctggtggatcag
tgctcgccgtggcatggctcggtgcagagcccacacatcatgaggcgggcgcccaaactc
tggtccacctccgcagagtcgcaggtcagcagcagcccaccacgctctccagcctcggtt
cccagtcccaaacaggaacccactaaaccaagttttgtggcccagttccttcaaaacaga
aaagaacaggttaaaaatttcatggcaaagcgggtgctgataatgtatttgtttaacaag
cttccagaagcctctagtcaggccctcttcgccgacagccaggctcacatctgggcgtta
gaagcgctgtcatacctggttcaggcctccttcacggaggaccagtttggggttgttcag
actacattacccagcattctcagctccatgctgcacttacaagaggctgtggatcgacac
tttaagctgcctcatgcttccagtaagccggtcaggtctgccaatagcatggaggacttt
acctacaaaacactgcggtttgctctcagagccacgctcaagactgccatttacaggata
accaccacctttggaagtcatttaaacgctgtccagatgtctgcagagcaccgaaaaaga
ctgcagcagtttctggagtttaaagaataa

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