Gambusia affinis (western mosquitofish): 122841008
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Entry
122841008 CDS
T07758
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122841008 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122841008 (prpf38b)
Spliceosome [BR:
gaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122841008 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
122841008 (prpf38b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
122841008
NCBI-ProteinID:
XP_043989828
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Position
LG12:11970849..11976818
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AA seq
463 aa
AA seq
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MANVGNQLPTQAVSKPPSGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVTHIEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTR
KQVMGLITHTDSPYIRALGFMYIRYTQPPTDLLDWYNDFLDDEEELDVKAGGGCVMTIGE
MLRSFLTKLEWFSTLFPRIPVPVQKAIDQQMKARPRKVAQKEPEEEAEFTESGRQGERRH
SRTPRRTPSPKRSPKRSRSRSHHRERDRHGPSFDRELERERDRQRKERDGGRDRERDRAD
RGDRERRRSRSADRNREHKRSLSGSRERRGERREKERDGAEDRSRKKDRDHHKDRGTERD
RSRDRKSRAENDERRHKEDRDRHREDRKAKRSSRSRSRERRHKGGAEEKSRKRDRSHSRE
RERERDGERSHKRSRSKERSRHQQESSNEHSKHGERRRSQSVE
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgtcggaaaccaactaccaacgcaggccgttagcaagcctccatcaggaaaa
catggcaacgtattgcccctatggggaaacgaaaagactatgaacctaaatccaatgatt
cttacaaatgtgctctcctcgccgtatttcaaggttcagctgtatgaactaaagacctac
catgaggttgtggacgaaatctatttcaaggtgactcacattgagccctgggaaaaggga
agcagaaagactgcaggccagaccggaatgtgcggaggggtgcgtggagttggcactggt
ggcattgtatcaactgctttctgtcttctttacaaactgtttactctcaagctaacacgc
aaacaggtgatgggtctcatcactcacacagattctccgtacatcagggcacttggattc
atgtacataagatacactcagcctccaacagatttattagactggtataatgacttcctg
gatgatgaggaggagcttgacgtaaaagcaggcggcggctgtgtcatgaccattggggag
atgctgcgttccttcctgaccaaactggaatggttctccacgctgtttcccagaatccca
gtgcccgttcaaaaggcgattgatcagcagatgaaggcgaggccccgtaaggtggcccag
aaggagccggaggaggaggccgagttcacagagtcaggaaggcaaggagaacgacgacac
tccaggacgccaagacggacgccgagtcccaaaaggtctcccaagcgatcgagaagcagg
agccaccaccgcgagagagaccgccacgggccgagcttcgaccgggaactagagagggag
cgggaccggcagaggaaggagagggacggggggcgggacagagagcgggacagggcagac
agaggggacagggaaagacggagatcacgtagcgcagacaggaacagagaacacaaaaga
agtctcagtggcagcagagagcggagaggcgaacgcagggagaaagagagggacggagca
gaagacaggagcaggaagaaagacagggatcaccacaaggacagagggacagagagggac
aggtccagagacaggaagagcagggcggagaacgacgagcggaggcataaagaagacagg
gacagacacagggaggacagaaaagccaaacggtcgagtcggagcagaagcagagaaagg
aggcataaaggcggagcggaggagaagagcaggaagagggatcgcagccacagcagagag
agggagcgagagcgggatggggagcgctcccacaaacgcagccgcagcaaagagaggagt
cgccaccagcaggagtccagcaacgagcatagtaaacacggtgaacggagaagaagtcag
agtgtggagtaa
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