Gambusia affinis (western mosquitofish): 122841265
Help
Entry
122841265 CDS
T07758
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gaf01009
]
122841265 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122841265 (hdac6)
04131 Membrane trafficking [BR:
gaf04131
]
122841265 (hdac6)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122841265 (hdac6)
Enzymes [BR:
gaf01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122841265 (hdac6)
Protein phosphatases and associated proteins [BR:
gaf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122841265 (hdac6)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
122841265 (hdac6)
Membrane trafficking [BR:
gaf04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122841265 (hdac6)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
122841265 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
122841265
NCBI-ProteinID:
XP_043990400
LinkDB
All DBs
Position
LG01:41498373..41506415
Genome browser
AA seq
1064 aa
AA seq
DB search
MASGSDPPGSGVKSVRRSPRLSPQAVGGVSLQEVKRRGRMERSREEEGLSGRLKTLDLCS
RSAASGTGLVYSQIFTQHQNLWDISHVESPDRVTAIMSELQRRELLSLCVTVEPREAAEE
ELLLAHTKLYVDTMRATQTMTQTELQSLSDGFDSVYLHPESFQVCVTAVGSVLQLVDRVL
TSEVRNGFAVIRPPGHHAQADQPNGFCVFNNMAVAARYAQKQHAVNRVLIVDWDVHHGQG
IQYMFQEDPSVLYFSIHRYEGGAFWPHLQESDCSFVGSGRAEGRNINLPWNKTGMSDADY
ITAFQQVLLPVACEFQPQLVLVSAGFDAAAGDPKGEMCVRPQCFHILTHLLMSLAEGRLI
LALEGGYDLQATAEGVAACVTALLGGACPLLNPPTAPCDSALQSISGTVSALYPHWASLQ
VLAGPGPEGPVATSAADHSSPTPASINTRVATTTGLAYDEKMMEHVNLWDRHHPEQPQRI
SKIFSKHQQQGLVTRCHRIPTRLATEEELAMCHSLQHIELMKVTAEMKPRDLHRLGNEFT
SIFFSNQSFQCAQLAAGSCFNVVDAILSGQLSNGVAIVRPPGHHAETDAPCGFCIFNTAA
LAARYAQKISHDPQLRVLILDWDVHHGNGTQHMFEDDDSVLYISLHRYDNGTFFPFSEDA
AAAKVGVAKGAGFNVNIAWSGGRMGDSDYLAAFHHVVMPIAAEFNPGLVLVSAGFDAARG
DPLGGYQVTPEGYAHLTHLLMSLAGGRVLIILEGGYNLTSISDSMAMCTSVLLGDAPPSL
ATPFPPPHHCAVATIREVIRQHAPYWRSLRITVPESVQLALPSPKHRGKRSSQGRVSDKQ
PLPPAGQEVATMQGVEQLTQGLASLDISQAPPTPQEPPTMEVKGDVESELENSQSAESMQ
TQSVTMAASESDPKGGAGSGEGAEPTSEGACGWSKPQVSLELTCSTEMGGDTLYVVDPLP
WCPHLDAVKPLPPSGVDVFQPCSDCSSDVENWLCLTCYQVCCGRYVNEHMVTHSAVSEHP
VVLSFSDLSVWCYLCESYVHHQVLFEAKNAAHFAKFGEEVPPWS
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccggatcggatcctccgggatccggagtgaaatcagtcaggaggtctccacgc
ctgtcacctcaggctgtcggtggagtcagcctgcaggaggtgaagaggagaggacggatg
gagaggagccgagaggaagagggtctgagtggacgtctgaaaacgctggatctgtgcagc
aggtctgcagccagcggaaccggactggtttactcccagatcttcacacaacaccagaac
ctctgggatatcagccatgtggagagtccagacagagtgacggccatcatgtcggagctg
cagaggagggagctgctgagcctctgcgtcaccgtggagcccagggaagctgcagaggag
gagctgttgctggctcacacgaagctttatgtggacaccatgagggcgactcagacgatg
acccagacggagctgcagagtctgtctgacggatttgattctgtctacctccaccctgaa
tccttccaggtttgtgtgacggctgttggttcagtcctgcagctagtggatcgggtcctg
acctctgaagtcaggaacggattcgctgtcatcagacctccaggtcatcacgcacaggcc
gaccagcccaatggcttctgtgtgttcaacaacatggcggttgcggctcgctacgctcag
aaacagcacgctgtcaacagggttctgatcgtagactgggacgtccatcatggtcagggc
atccagtacatgttccaggaggatcccagtgtgctgtacttcagcatccacaggtatgag
ggcggagccttctggcctcacctgcaggaatcagactgcagctttgtgggcagcgggcga
gctgaagggaggaacatcaacctgccgtggaacaagacggggatgagtgacgctgattac
atcaccgccttccagcaggtgctgctgccggtggcctgtgagttccagcctcagttggtt
ctggtctcagctggatttgatgctgcagctggagatccgaagggggagatgtgtgtgcgc
cctcagtgtttccacattctgacccacttgttgatgagtttggctgaaggtcggctcatt
ctcgctctcgagggaggttatgaccttcaggcgacagcagagggcgtcgcagcctgcgtc
acagctctgctgggcggagcctgtcctcttctgaacccgcccactgctccctgtgacagc
gccttgcagtccatctctgggaccgtttcagcgctgtacccacactgggcctcgctgcag
gttctggctggtccgggtcctgaggggcccgtcgccacatcagcagccgatcacagcagc
ccgacacctgcttccatcaacacacgtgttgccacgacaacgggtctggcttacgacgag
aagatgatggagcatgtgaacctgtgggacaggcatcaccctgaacagcctcagaggatt
tctaagatcttctccaaacatcagcagcagggattggtcacccgttgccatcggataccc
acccgcctggcgacagaggaggagctggccatgtgtcacagcctgcagcacattgaactg
atgaaggtgacggcagagatgaaaccccgcgaccttcacagactgggaaacgagttcacc
tccatcttcttcagtaaccagagcttccagtgcgcccagttggctgcaggaagctgcttc
aacgtcgtggacgccatcctgagtggccagctcagtaacggcgtggccatcgtccgccct
ccgggtcaccacgctgagacagatgctccctgcggtttctgtatcttcaacaccgctgct
ctcgccgctcgctatgcccagaaaatctcccatgatcctcagctgcgagtgctgatcctt
gactgggacgttcaccatggcaacgggacgcagcacatgtttgaagacgacgacagcgtt
ctgtacatctctctccatcgctatgacaacgggacattcttcccattctcagaggatgcc
gccgccgccaaggtgggcgtggccaagggggcgggctttaacgtgaatatagcgtggagc
ggcgggcgaatgggcgactccgattacctggcagcgtttcatcacgtcgtcatgccgatc
gctgccgagtttaaccctggactggttctggtgtcggccgggttcgacgcggcccgggga
gatccgctgggcggataccaggtgactcctgagggatacgcccacctcacacacctgctg
atgtcactggctggggggcgtgtcctcatcatcctggagggcggttataacctgacgtcc
atctctgactccatggcgatgtgcaccagcgtgttgctaggagatgctcccccctccctg
gccactccctttcctcctccccatcactgcgctgtggcaacaatcagggaagtcatccga
cagcacgccccctactggcgttccctgaggattaccgtaccagagtcggtgcagttggct
ctcccctccccaaagcatcgtgggaaacgcagttctcaaggcagggtgtcagacaaacag
ccgctgccccctgctggacaggaggttgctacgatgcagggtgtggagcagctcactcag
ggattggccagtctagatatctctcaagccccgcccactccacaggaaccgcccacaatg
gaggtcaaaggtgatgtggagtctgagttggagaacagccaatcagcagagagcatgcag
actcagagtgttaccatggcagcatcagagtcagaccccaaaggaggagcagggtcaggc
gaaggggcggagcctacatcagagggagcctgtggttggtcgaagcctcaggtgtctcta
gagttgacgtgcagcactgagatgggcggagacactctctacgtggtggaccctctgccc
tggtgtcctcacctggatgccgttaagcccctccctccatcaggtgttgacgtcttccag
ccgtgcagcgactgcagttctgatgtggagaactggctctgcctcacctgctatcaggtg
tgctgcggtcgctacgttaacgagcacatggtgacgcacagcgccgtgtcagagcatcct
gtggtgctcagcttctctgatttgtctgtttggtgctacctgtgtgagtcctacgtgcac
caccaggttctgttcgaggccaagaacgccgctcacttcgccaagtttggagaggaagtt
cctccctggagctga
DBGET
integrated database retrieval system
