Gambusia affinis (western mosquitofish): 122842044
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Entry
122842044 CDS
T07758
Symbol
si:busm1-71b9.3
Name
(RefSeq) EP-cadherin
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04371
Apelin signaling pathway
gaf04514
Cell adhesion molecules
gaf04520
Adherens junction
gaf05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
122842044 (si:busm1-71b9.3)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
122842044 (si:busm1-71b9.3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
122842044 (si:busm1-71b9.3)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
122842044 (si:busm1-71b9.3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gaf03036
]
122842044 (si:busm1-71b9.3)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gaf04515
]
122842044 (si:busm1-71b9.3)
04090 CD molecules [BR:
gaf04090
]
122842044 (si:busm1-71b9.3)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
122842044 (si:busm1-71b9.3)
Cell adhesion molecules [BR:
gaf04515
]
Cadherins
Major cadherins
122842044 (si:busm1-71b9.3)
CD molecules [BR:
gaf04090
]
Proteins
122842044 (si:busm1-71b9.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_pro
He_PIG
nos_propeller
DUF6716
Motif
Other DBs
NCBI-GeneID:
122842044
NCBI-ProteinID:
XP_043991478
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All DBs
Position
LG13:3616215..3631190
Genome browser
AA seq
853 aa
AA seq
DB search
MGTIWFTVWCALLLNVQASPAGGTEDQICEPGFDSESVIFKVTEKRLRPTTILGKVNFTD
CTDVTRLFITTDPYFYVETDGTVRVSRWLVLQEGQRRFFIHSWDSKGKKRTVSAVVQYQR
DHDAAHGLQSDFPLKDITNNLEVPFLHFPSSSEVLRRKRSLLFNTISIVENSRGPFPLRV
AQIRSDADRTAKIRYSISGPGADQHPVGLFTMNRDTGHLYVTQGLDRETKDTYELQVQAV
VDGSAPAEAPELIVVKVIDQNDNKPVFTFLGNVAESSPIGSEVIKVTATDADEPNSDNSR
ISYRIVSQEPQQPNPSMFVINPATGAISVNAAGLDRQKYPEYTLEVEAADMNGQGHSALT
KVIISVTPGTELPPAQGGGRSRRDADQEIHHSSSEKMFLDLLLLPSEEGMRRRKRSWVIP
PLSVPENSRGPFPLNLAQVRSDRSEVTKIIYKLRGPGADQPPVGLFIIDSDSGWLAVTQT
LDRENQHKYTLEALAVEEGQTEASETIEIIVNVIDQNDNKPVFSRDTFQGEVPQSSAKGF
QVMTVQATDSDEENSDNSDICYRIISQEPEEPNPSMFAINATTGVITVEATGLDREKHPQ
YTLTVTAADMRGEGLIGTAKVILTITDSSSPTGWVIPDIPVPENVIGPFPLQLAQIRFKE
DETKKIIYSISGPGADQPPVGLFTMDGDTGHLYVTQGLDRENQDKYTLQVNAVAEDGGTT
VGQTQAVVKVTDQNDNKPVFNKDTYEGEVPEASPRGFEVIKVEATDADEPNTDNSEIRYS
IISQEPAEPSMFTIDPVSGAITLSTDGLNREKQPQYTLLVKAEDSAGKGSTALFEQVKVT
LTVTTNSASMSQA
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggggaccatttggttcacagtttggtgtgctttactcttgaatgttcaggcttcacca
gcagggggcacagaagaccaaatatgtgaaccaggatttgactcagaatcagttattttt
aaagtgactgaaaagcgtctgaggccgaccaccatcctgggaaaagtgaacttcaccgac
tgcacagatgtcacgaggctttttatcaccactgatccctatttctatgttgagactgat
gggacagtaagggtttccagatggttggttcttcaggagggacaacgacgtttcttcatc
cactcctgggattcaaaaggcaagaaacggaccgtctctgctgtggttcagtaccaaagg
gatcatgatgcagcccacggcctccagagtgattttccccttaaggatatcacaaataac
ttagaggttccattcctgcattttccatcgtccagtgaagtactgaggaggaaaaggagc
cttctcttcaatactattagtattgtagagaattccagaggacctttccctttacgtgtt
gctcagattcgctctgatgctgatagaactgcaaagatccgttacagcatcagtggtcca
ggagcagatcaacatcctgttggtcttttcaccatgaacagagacactggtcatctgtat
gtcacacagggactggacagagagacaaaagacacatatgagttacaggtacaggctgtg
gtggatggttcagcccctgctgaggcgcctgagctgattgttgtcaaagtaattgaccag
aatgacaacaaacctgttttcaccttcttgggaaatgtggccgagtcttcaccaataggt
tctgaggtgatcaaggttacggctacagatgctgatgagccaaacagtgacaactcacgt
atcagttatcgcattgtgagccaggaacctcagcaaccaaatccatccatgtttgtcata
aacccagctactggagccatcagtgtcaatgctgctggactggacagacagaaataccct
gagtataccctggaggtagaagcagcagatatgaatgggcagggacattctgcattaaca
aaagtaatcatctctgtaactcctggcaccgagctccctcctgcccaaggaggagggaga
agcaggagggatgcagatcaagagattcatcattcttcttcagagaaaatgttcctagat
ctgttgcttcttccatctgaagaagggatgaggagaaggaagagaagctgggttattcct
cccctcagtgttcctgagaacagcagaggaccgtttcctctaaaccttgctcaggtccgc
tctgacagaagtgaagtgacaaaaatcatttacaagcttcgtggtccaggagctgaccag
ccacctgtaggccttttcattatagacagcgactctggttggttggcagtcacacagaca
ctggacagagagaaccagcacaagtacacattagaagcacttgcagtggaggaaggacaa
accgaagcatctgagaccattgaaataattgtgaatgtaatcgatcagaatgacaacaaa
ccagttttcagcagagacaccttccagggagaagtgcctcagtcctcagctaaaggtttt
caggtgatgacggttcaggccacagattctgatgaggaaaattctgacaactccgatatc
tgctatcgcattataagccaagaacccgaagaaccaaatccttccatgtttgcaatcaac
gcgactaccggggttatcacagtcgaggctacggggctggacagagagaaacacccacag
tacacactgacagtgacagctgcagacatgagaggcgaggggctgattgggacagccaag
gtcatcctaactataacggatagttcttcccctactggctgggttattcctgacattcca
gttcctgagaacgtgattggacctttccctttacagctagctcagatccgctttaaagag
gatgaaacaaagaagataatttacagcatcagtggaccaggagcagatcagcctcctgtt
ggtctttttactatggacggagacactggtcatctgtatgtcacacagggactggacaga
gagaaccaggacaagtatacattgcaggtaaatgctgtggcagaggatggagggacgaca
gtaggacagacacaggctgtggtcaaagttaccgaccagaacgacaacaaacctgttttt
aataaagacacctacgagggagaagtgcctgaagcctcacccagaggttttgaggtgatt
aaagtggaggccacagatgctgatgagccaaatactgacaactcagagattcgctatagc
attataagccaggaaccagcggaaccctccatgtttaccatcgacccagtttctggagcc
atcactcttagtactgatggactgaatagagagaaacagcctcagtacactctgctggtc
aaagcagaagactctgctggcaaaggcagcactgctttatttgagcaagttaaagtaact
ctgaccgtgacaacaaactctgcgtccatgtctcaggcttag
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