Gambusia affinis (western mosquitofish): 122842160
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Entry
122842160 CDS
T07758
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122842160 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gaf04131
]
122842160 (vps8)
Membrane trafficking [BR:
gaf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122842160 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
Clathrin
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_11
zf-RING_5
Beta-prop_HPS5
Beta-prop_EML_2
zf-RING_2
WDR55
ANAPC4_WD40
zf-C3HC4
EIF3I
WD40_Prp19
Beta-prop_IP5PC_F
zf-rbx1
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
122842160
NCBI-ProteinID:
XP_043991714
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All DBs
Position
LG13:complement(3339691..3368969)
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AA seq
1403 aa
AA seq
DB search
MSQSPDSRSLLSASSQLNLMEVESIDDKEFDIPQVDTPPTLESILSQMEEEEEPFVLEDT
CLLNTDNMDAQSYDTSSLASSDSGDPAHLKRKRRTLDQNAAVHGSVLRLSLLKGISAQIV
AAADKVDAGLPTAIAMSGVIAVGTSHGLVLVFDTNQALRLCLGSKTTGAEFGAVSALSIN
HDCSRVLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELTFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRTPPDFRDHPITCYSLLAMASLTKILI
IGLKPTLNVWMTLPYTKSDPSSVPQLAWQFVPVQKTVNPMLAFCKGDSVHFLLVKKEETG
TIHVIKQRQLHLSCDIISLNWINSCSLVLLDSHEKLHVVDRPTQDVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSLSSYAGQIVCLGTKSAHIMSLRNWKERLDCLL
KQEHFTEALSLAWSFHEGTARAVVGLHGDSQKRKAVISDKMVEILLHFTEYAVKKCPEQG
KLQVMEQHFQEVVPVLVDYCLLLQKADLLFNQLYSRLVENMVAKGVFLESLESYIIANRL
GHITTPVMKDLLAHYHDNGMMDSLERCIVHLDVTSLDIQQVVQVCWNNQLYDAVIYIFNR
GMNDYITPMEKLFSVIGPRVREGRSLTGDDVVMGNKLLVYISCCLAGRAYPIGDIPEDLV
VQVKYQVFEFLIRLHSGDSSQKEEVFPFIHTLLHFDTREFLNVLAMTFDDVQNDKQALEY
QQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPNNTLFVNRNLFDQVLEFLCCPDD
DSRHTERQQVLLELLQVGGVVQFNEERLFTLAEKAKFYQICEFLYEKKHLYDRIVDCYLQ
DPLRKAEIFSYIHNLMSMPGYSSEEKLKVKEKVLQHMQELVSLDPGKLADLVVWHFTEEV
QTIISELQDDSLLFQFLRCLLESQEGSQSASRLPLESEFYELLLDLMCRFEPQELLKFLH
TSQHYRLEEAIQITEKYHCNEAKAYLLEKKGDIPGAFAGLLQTLKESLDVLAAEMSDGFG
GGVDGRDEEEADGEFTLTTVKSSLNQMILFCHRNCQNLDQEQRKDLWFPLLDTMMASQKE
VMGLSDKHISDGLKEMTLKVLNCMSSFISLPAIIQQILQDPVYGRGKLAEIQGLILGMLD
TFTYEQTLLETTTNLLNHDLHWSLAHLRSAVTRGLHPRQDCCNICLQHYKRKQDVTEEII
VFSCGHLYHLQCLQQKDCGWGVASEPQQPWRCYKCSSSHGGRGGACSEPNRSRSASLAQT
RFSSGHYEKGAETHRKKVVAVATLDVQQELSWDHLRGLYRGPSRLSILSEVSHGQSSEKA
GFLLPAQPESFHLKLAPPPLFEE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtctccagacagcaggagccttttatccgcttcttcccagctcaacctgatg
gaagtagagtcgattgacgataaggagttcgacattccccaagtggacaccccccccaca
ctggagagcatcctgagtcagatggaggaagaggaggagccttttgttctggaggacacc
tgccttttaaacacggacaacatggacgctcagtcctacgacacgtcctccttagccagc
tctgacagcggtgacccggcacacctcaaacggaagagaaggactctggatcagaacgca
gcggttcacggctcggtcctccgcctcagcctgctgaagggcatctccgctcagatagtt
gctgctgctgacaaagtggatgctgggctgcccactgcaatagccatgtctggtgttatt
gctgtaggaacatctcatggtcttgtcctggtgtttgacaccaaccaggctctgcggctc
tgtctgggcagcaagacaaccggagcggagttcggcgccgtctcggctcttagcatcaac
cacgactgctcacgtgtgctgtgtggctttgccaagggtcagattacaatgtgggatctc
gccaacggaaagcttctgaggaccatcactgatgcccatcctccagggacggccatactg
catgtgaagttcacagatgacccaactctggccgtgtgcaacgacagtggagggtctgtg
ttcgagctgaccttcaggagagtgatggggatgcgctcgtgcgactcacggtgtctcttc
agcggctctaaaggagaggtgtgctgtatagaaccactgcggactcctccagacttcaga
gaccaccccatcacatgctactctctcctagctatggcttccctgaccaagattctgatc
attggactcaagcccactctgaatgtgtggatgactcttccctacactaagtctgatccc
agcagcgtgccccagctggcctggcagtttgttcctgtccagaagacggtcaaccccatg
ctggccttttgtaaaggagactcagtccacttcctgctggtgaagaaagaggagacgggc
accatccatgtgatcaagcagaggcagctgcatctgagctgtgacatcatcagcctgaac
tggatcaacagctgcagcctggtgctgctggacagccatgagaagctgcacgtagtggac
cggcccactcaggacgtcctggagacgctggacctggagcaggtgcagctggtctacaac
agccggcacttcaagtccctggcaaccggagggaacgtctcccaggctctggcgctggtt
ggagaaaaggcctgctaccagtcactgtcaagctatgcaggacagatcgtctgcctgggg
accaagtcagctcacattatgtccctaaggaactggaaagagcgtctggactgtttacta
aagcaagagcatttcactgaggctctgtctctggcctggtccttccatgaaggcaccgcc
agggctgtggttgggctgcatggagattcacagaaaaggaaggcggttatcagtgacaag
atggtagagattcttctccattttacagagtacgctgtgaagaaatgcccagaacagggc
aagctgcaggtcatggagcagcatttccaggaagtggtgccagtcctggtggattattgc
ctcctgctgcagaaggctgacctgctgttcaaccagctgtactctcggctggtggagaac
atggttgctaagggcgtcttcctggagtcactggagtcgtacatcatcgccaaccggctt
ggtcacatcactacgcctgttatgaaggacctcctggcacattaccatgacaacggtatg
atggacagcctggagagatgcattgtccatctggatgttaccagtctggacatacaacag
gtggtccaggtgtgttggaacaaccagctctatgatgcagtgatctatattttcaaccga
ggcatgaatgactacattactccaatggagaaactcttttcagtgattggtcctagagtc
agagaggggcggagtctaacaggtgatgatgtggtgatggggaataaattactagtttat
ataagctgctgtcttgctggaagagcctatccgatcggagacatccctgaagatctggtt
gtccaggtcaaataccaggtgtttgagttcctgatccgtctccattcaggcgactcctca
cagaaggaggaagtcttcccgtttattcacacactcctccactttgacactcgggagttc
ctcaatgttcttgccatgacgtttgatgatgtccagaacgacaagcaggccctggagtac
cagcagaggatagtggacatcttacttcaggtaatggtggacaaccctgacttcactccc
tcccaagtcggcggtctcttcaccttcctggctcggcagctggccaagccaaacaacacg
ctgtttgtgaacaggaacctttttgatcaggtgctggagttcctgtgttgccctgacgat
gactctcgacatactgaacggcagcaggttctgctggagctgctgcaggtcgggggtgtg
gtccagttcaacgaagaacggctcttcacgctggcagagaaagccaagttctaccagatc
tgtgagttcctttatgagaaaaagcatctgtatgaccgcatcgtggactgctacttacag
gacccacttcgaaaggcagaaatcttcagctacatccacaacctgatgtccatgccgggc
tacagctctgaggagaagctgaaggtcaaggagaaggttctgcagcacatgcaggagctg
gtgagcctggatcctggtaaattagctgacctggtggtgtggcacttcacagaggaggtg
cagaccatcatctctgagctgcaggacgacagtctacttttccaattcctccgctgtctc
ctggagtctcaggaaggatctcagtccgcgtcccggctgcctctggagtctgaattttat
gagcttttgctggacctgatgtgccgctttgaaccgcaggagcttttgaagttcctccac
acctcccaacattacaggcttgaggaggccatacagataacagagaagtaccactgtaat
gaagccaaggcttatctgctggaaaagaagggagatattcctggagcatttgctggattg
ctgcagaccctgaaggaaagcctggatgtcctcgctgcagagatgagcgacggctttgga
ggaggagttgacggacgggacgaagaggaggcggacggtgaattcacactgacgacagtg
aagagttcactcaaccaaatgattctcttctgtcatcgaaactgtcagaatcttgatcaa
gagcaaaggaaggatctgtggtttccactcctggacaccatgatggcctctcagaaggaa
gtcatggggctcagcgataaacacatctcggatgggctgaaggagatgaccctgaaggtt
ctcaactgtatgagcagctttatttcacttcctgccatcattcagcagatcctacaggat
ccagtttatggaagaggaaagctggcggagatccagggactcattctgggcatgctggac
acgttcacctatgaacagactctgcttgaaacaacaacaaatctgctgaaccacgacctc
cactggtccctggcacacctccgctccgctgtcaccagagggcttcatccccgtcaggac
tgctgcaacatctgcctgcagcactacaagaggaagcaggacgtgaccgaggagatcatc
gtgttcagctgcggccacctgtaccacctgcagtgcctgcagcagaaggactgtgggtgg
ggcgtggcctcagagccgcagcagccgtggaggtgctacaagtgctcctccagccatgga
ggaaggggcggggcttgttctgagccaaacagaagccgcagcgcgtctctcgcccagact
cgattttcatcaggacattatgagaaaggagctgagactcacaggaagaaggtggttgct
gtggcaacattggatgtgcagcaggaactctcctgggatcacttgcgagggctgtacagg
ggaccgtccaggctgtccatcctctccgaggtttcgcacggccaaagcagcgagaaagca
ggcttcctgcttccagcccagccggagagtttccacctgaagctcgctcctcctcctctg
tttgaggagtag
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integrated database retrieval system
