Gambusia affinis (western mosquitofish): 122842420
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Entry
122842420 CDS
T07758
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gaf03016
]
122842420 (tarbp1)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122842420 (tarbp1)
Enzymes [BR:
gaf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
122842420 (tarbp1)
Transfer RNA biogenesis [BR:
gaf03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
122842420 (tarbp1)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122842420 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
122842420
NCBI-ProteinID:
XP_043992185
LinkDB
All DBs
Position
LG13:17064717..17078411
Genome browser
AA seq
1624 aa
AA seq
DB search
MSSTLIQAVLSSSPNYDTLFESLCWPEDSWPQTERVDALTALIEALGPFLTDSDSVQTPL
TGVNRSGIRDKIESVIWSKCLPFLCRLSAEARDDTRYRDSTATVCRLLRVSVVVCGENVR
TRVVSSILPSLQRMSEEELLTPGTLSVQIAAEVLAALMPLLTADEELTLHTLNCALSSVR
SLPDHLVPKIMVRIILTSLSCCSDARSNIILKRILDDVCSWHSTERTPVVTERTLLCLTV
LSDHLLKSHIATSSECGEADPRLRPQFWMICQDGLTHRDSVSRKRALYLLKRCAALSEEE
GFDSRSSTSQDGETLFKWAPSKSKALREFWEDYTLVMETLEENQVHVVRPVLNRIDTLIQ
ATVNDSEGSGLFHPSWLLCVYQRMFHSENKSLMREGVCHLLQLQVLQQPAFAAAFSQFVV
SSFINVLSETSLFCRSPGQSVGDCPELAVKLQVFLVTFFTSLPSEDRGCVLFQLIQQLSA
KHWCAVPLLFVCQAFSHLPPSPLLKISGLSALREVLRCTMITHQVLLRGAAQCFLLKSAL
SLMDVSEVTIDDIFSFLMHFRADESLCRGTELWNELCIWLLEHECSFKSRILDGDFTDDP
TQKETIRAYVQQEVLAYLRVPASTGQAEQLPDTREADKLARALLLCVDMERRRLGGETSE
ILGSLLSPLLDTLSRVYTNIYLPVRKSDKSLQLLLRLLQLGTKPCGQQKEVEEDEVMFAI
EQTFLKLVDPVQDFILRRLCGELQELFDVERAELYLCVLRQLVVMCSSSSHCHKNIQQFA
FPKLIKYSLSVLLEPTQQVPSVANQVSKAVSMASLAAVCELLQQGGISIRADTASALKSM
NDYFCTLKTSSQCQSSLGNINKSLMKPQLLGSSSDLEAQGLLQQDWGRIAANFLRDQWIC
LNFLIRTVGIKASVEISQVSETLGAALSCSIEALALLPSDLVLPVLNFMNTLLPQLVQDQ
ENLCVQAVTLSWELVQGLSTNAHDFWPALKGFISMAFQHKLLQLTHDQAPILTTALKKIF
SDLLELSQSKSGVFGVLLQHCCQTWLPNDPAIRDQAAAMFSSVFNHLDIVTEACVYGPVF
RRDQRLVLDVQIYVEQLGAKCAANVAVTSDVRDDQLPRTWVLTFLSRLDPSIEQHQRFME
ELVMELLRKDSLISKSKVRYYGNSLQHRIKNRAWQTLLLLLPKLKEDFVATLLNHVFEAG
FCSNQASVKYLIEWMMILILVKYPHHIHKFWSCFNFDHEKTKTSICTFLSVLVHFNVIIP
QVKDKVGQLRRALDVILQSCFNHNFSVRLYALLALKKVWSLAEKEDEEAFKGLSSVVTAC
LNQAEAMQSTGNANKNWLRIQGHFFFGAFHPIRDYSMETIFQTFPSLSELADDEWIPLWK
FEKLTFFPESLLIPLKNAAPELGQLQAGDWVQQDRSEQDKEERWSEVQKKITPWRSGVND
QEAELKLVPAQRAARLGKQHGTLLVVASLIDKPTNLGGLCRTCEIFGASGLVLDSLHHLN
DKHFQSLSVSAELWLPLLEVKPVELTHFLQLKKSEGYCIIGVEQTANSQKLQDFKFPEKT
LLLLGNEREGIPANLLQMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQHLITESQEVH
SHCG
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccactttgattcaggcggtactgagcagctctcctaattacgatactttgttt
gaatctctatgctggccggaggattcgtggccgcagacggagcgtgttgatgcgctcact
gctcttatcgaagctctaggaccgtttctgaccgattcagattcggttcagactccactc
acaggtgtaaacagaagtggcattcgtgacaaaattgagtcggtcatttggtcgaaatgt
ctgccatttctttgcagactctcagcagaagcaagagatgacacgcgctacagagacagc
acagccactgtctgcagattgctccgtgtctccgtggttgtgtgcggggaaaacgtgcgg
actagagtggtttcatcaatcctgccgtcgttacagcggatgtcagaggaggagctcctt
acgccggggactctaagtgtgcagattgctgctgaagtcctggctgctctcatgcctctt
cttacagcggatgaagaactcacactccacactttaaactgcgcgctgtcctctgtcaga
tcactccccgatcatctggtacccaaaataatggttaggataattttaacttcgctcagt
tgctgcagcgatgcgaggtccaacatcattctcaagcgcatcctggatgatgtttgcagc
tggcactccacggaacgaacaccggtggtcacagagaggaccctgctgtgtttgaccgtc
ctgtcagaccatctcctgaaatctcacatcgccacctcctccgagtgtggcgaggccgac
ccacgtctgcgtcctcagttctggatgatttgtcaggacggactgacgcacagggacagc
gtgtcacgcaagagggcactgtacctgttgaaaagatgcgcagcattatccgaagaggag
ggttttgattcccgttcttctacatcacaggatggagagacattgtttaaatgggccccc
agcaaaagcaaagcgctgagggagttctgggaggattacactctggtgatggaaacgctg
gaggagaatcaggttcatgttgttcggccagttttaaacagaattgacacgttaatccaa
gcaacagtgaatgatagtgaagggtcaggcctgttccacccgtcctggctgctgtgtgtg
taccagcgcatgttccacagtgagaataaatccttaatgagagaaggagtgtgccatctg
cttcagctgcaggttcttcagcagccggcctttgcagcagccttttctcagtttgtcgtg
agttccttcataaatgttctgtctgaaacgtccctcttctgtagatcaccagggcagagt
gtaggagactgtcctgagctggcggttaaactccaggtcttcctggtcaccttcttcaca
agcctgccatcggaagacagaggttgtgttttgtttcagctgattcagcagctcagcgcc
aagcactggtgtgccgtaccgctcctctttgtctgtcaggctttttcacatctccctcca
agtcctctgctgaagatcagtggcctatctgctctacgggaggtgctacgctgcaccatg
atcactcatcaggttctgctaagaggagctgcacagtgttttttactaaagagcgccctc
tctctgatggatgtgagtgaagtgactatagatgacatatttagtttcctgatgcatttt
cgtgctgatgagtctttgtgtagggggacagagttatggaatgagttgtgcatctggtta
ttggaacatgaatgcagcttcaagtccagaattctggatggcgatttcaccgatgatccc
acacaaaaagaaaccataagagcctatgttcaacaagaggtacttgcttatcttcgtgtt
ccagcaagcacaggtcaggcagaacagttacctgacactagagaggctgataagctggca
agagcccttctgctgtgtgtggacatggagaggaggcgactgggaggagaaaccagtgaa
attttgggttcactgctgtctccgctactggacaccctgagcagagtttataccaatatc
tacctgcctgtccgtaagagtgacaagagtctgcagctcctgcttagactgctgcagctt
gggacgaagccttgtggtcagcaaaaagaagtggaagaggatgaggtcatgtttgccatt
gaacaaacctttcttaaacttgtcgacccagtccaggattttatcctgaggaggctgtgt
ggggagctgcaggagctctttgacgttgaacgggccgagctgtatctgtgtgtcctgagg
cagctggttgttatgtgcagctcttcgtctcactgccacaagaatatccagcagtttgct
ttccccaaactcataaagtacagcctttcagttttgcttgagccaacccaacaggttcca
tctgtggccaatcaggtgtccaaggctgtcagtatggcttctttggctgctgtgtgtgag
ctcttgcagcaagggggaattagtatcagagcagatactgcttctgccctgaagtccatg
aatgattatttctgcactttgaagacttcctcacagtgtcagtcttctcttggaaacatt
aataaatctttgatgaaaccacagctattaggtagttcaagtgaccttgaagcccaaggc
ctcctgcaacaggactggggacgcattgctgccaatttcttgcgggaccagtggatttgt
ctaaacttcctgattaggactgtagggattaaagcatctgtagaaatttcccaagtatcc
gagacccttggagctgctctgagttgcagcattgaggccctggctctgctgcccagtgac
cttgtgctgcccgtgctaaacttcatgaacacgctgctcccacaattggtgcaggatcag
gaaaatctctgtgtgcaggcggtcactctgagttgggagcttgtacaggggcttagcaca
aatgctcatgacttctggccagcactaaagggcttcatctccatggccttccagcacaaa
ctcctgcagctgacacatgatcaggctccgattctcacgactgcactgaaaaagattttc
tcagacttattggagctgtctcagtcgaagagcggtgtcttcggtgtgctacttcagcac
tgctgtcagacctggctgcccaatgacccagccatcagagatcaggctgctgctatgttc
tctagtgtttttaaccacctggatatagtcactgaggcctgtgtttatggaccagtgttc
aggagagatcaacgactcgtcctggacgtccagatatatgtagagcaacttggtgcaaag
tgtgccgctaatgttgcagttacaagtgatgtcagggatgatcaactgccccgcacatgg
gtgctgacatttcttagccgcctggatccttctattgagcagcatcagagattcatggag
gaattagtgatggagctgctgagaaaggacagtctcatatcaaagtccaaagtccgttac
tatggtaactccctgcagcatcggatcaaaaacagagcatggcaaacactgttgctgttg
cttcccaaactcaaagaggattttgttgccactctgttgaaccacgtctttgaagctgga
ttttgcagcaaccaggcctcagtgaagtacctgattgaatggatgatgattcttattctt
gtcaagtatccgcatcatattcacaaattttggagctgcttcaactttgatcatgaaaag
accaagacgagcatctgcaccttcctgtctgtcctggttcacttcaatgtcatcattcca
caggttaaggataaggtcgggcagctgcgtagagctctggacgtcatcctgcagtcgtgt
ttcaaccacaacttcagcgtgcgcctgtatgcgttactagcgttgaagaaggtgtggagc
ctcgcagagaaagaggatgaggaagctttcaaagggttgtcttctgtggtgacagcctgt
ctgaaccaggctgaggccatgcagagcactggaaatgccaacaagaactggctgaggatt
cagggacacttctttttcggagcctttcatcccatcagggattacagcatggagaccata
tttcaaacttttcccagtctgtcagagttagccgacgatgagtggatcccactgtggaag
tttgaaaagctgacattctttcctgaaagtctgttaatcccgttgaagaatgctgctcct
gagttgggccagctccaggctggagattgggtccagcaagatcgaagtgagcaggataaa
gaggagcgctggtctgaggtgcagaagaagatcacaccctggaggtcaggggtcaacgat
caggaggccgaactgaagctggttccagctcagcgggcagctcggctgggcaaacagcac
ggcaccctgctggtggtggcctccttgattgacaagcccactaatttaggaggtctctgc
agaacatgtgagatatttggggcgagcggtctggttctggacagtctgcaccatctcaat
gacaaacacttccagtctctgagcgtttcagctgagctttggcttcctttgctagaggtg
aagcccgtggagctcactcatttcctccagttaaagaagagcgaaggttactgtattatc
ggagtggagcagactgccaatagtcagaagctccaggacttcaagttccctgaaaaaact
ctgctacttctgggcaacgagcgggaaggtattcctgccaatctgctccagatgttggat
gtgtgtgtggagatccctcaacaagggatcatccgctcactcaatgtccacgtgagcgct
gccctgttgatctgggaatatacgcggcagcacctcatcaccgaatcacaagaagtccat
tcacattgcggctga
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integrated database retrieval system
