Gambusia affinis (western mosquitofish): 122842543
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Entry
122842543 CDS
T07758
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122842543
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122842543
NCBI-ProteinID:
XP_043992456
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All DBs
Position
LG13:complement(11765804..11793429)
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AA seq
1780 aa
AA seq
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MDELTRQMEISGEKVLTETVTSTTRLTSLPPKGTSGSNHRNMSSSTGGLGFEKNVLTQNS
SGTYFSSSSIGVTSNYSSSSGIYLGGDSSGGGEGGGSYIDGEGYGSGAGGGGGGRVGSSG
STYLVSSVSKVRSSSSGGARRAQTGGSSVGLSPGFRERKTITSRSGGYDGSSSGNSSPEF
SRKDYGNYCSGATRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRS
SASVTLPVPKKASVETKTVSVGTQSASTLFEPIVQTNGFNTIDVSGLYDSRLTSRQRDSG
VQTGQHTVTVKSCHCDAGVKSSQYDVSLSSGQYDTGLKSGRYDMNLKSGQYDTTGRSGQY
DTLDSAFPTFSWSTSTLPSPSTTVVAGNTSSYTYQLGQVSANNRSGGSPPLSPVPQQSLS
VYGFQNNLAPTSIGALTTSGGNVTANLGGYGVQKNVSNGSAVISSGISTATRSQTDDVYK
RDYRYMASEKENVPARREGEMLILAKDSGKQFTTTSSAHIGGGSLSGDSIKKEKLISSYV
DTGTLKAETGNSYYGSSGVLMKDKATYAEIHRDSGIFGGGGLCCCSDSCCSWWKWLLGLL
LLCLLLLGLLFGLIALAEDVRKLKKQVSSLENDVSVANARTSRLSGSGSSNDINTYVSGG
GGGAGTDNTLILGFGGAGGGGSDSKTQISIAGAGAGAGGSASRNDVDVGVVGVGGAGGAA
GAGTSSSSSAGTSLSGGAGSAGTGGVSAGGASFGGGTGGSGTSFVIGGGGGAGSGVGTGV
SGRYIDSAFLQMTVHQMLKSEMQSQAFRGFLASSVQGERGLPGPKGDSGLKGEAGFPGIP
GAPGPMGHAGPEGPKGQKGSQGEHGVEGPPGIRGREGPPGPRGDPGATGFGLKGDKGEAG
SVGPAGAPGPKGAQGIQGLQGPPGPHGFRGEAGLPGPKGDRGLAGFQGLKGETGEKGVRG
LQGEPGLPGPAGEKGSKGSMGLSGQDGEKGSRGDQGPSGPPGLRGSAGPPGDAGLPGTPG
LQGPPGIPGNPGRPGAKGEPGQAGRIINAAGSASVGIPGPPGPAGPPGPAGPPGLSGPIG
PAGLPGPPGPKGDRGYKGEQGETGITRETISSSAAGTQFGAGGSSSFRSIPGPPGPPGPP
GRPGDSRQGPPGPPGPPGQPGYGIPGPKGEKGDVGFASSSGTYYSGPPGPPGQPGPKGAT
GSPGPRGYTGEQGPQGVPGTPGRAGSSITYGGNAVPGPPGPPGPPGLPGIPGVKGDTGAP
GIPGASRGSVSVTSGPAGPPGPPGPPGSPGSFASSTEMRQYISDYLSRYRLSSLPGPPGP
PGPPGLPGTFSGSIDDISTRIIAYLRRSDSGFSIGVQGPPGPPGPPGPTSGSLTVSALIT
MLQRDDVRRYLLSGPPGPQGPPGPPGASGGLSGTYRIEEIATYVFNIMNERGIARGPPGP
RGLPGPPGAPGAGGSGYTTATIDYSALIRNSDFRSWITSAVQQGPSGPPGAPGLPGPPGP
QGPPGVSTATVYGSGGRGYSLEDIQRYLQGSGFRGLPGPPGPPGPQGPPGAVTGSVSYSG
NLPRESIRAEIQQYLSSDSVRRTIAGPPGPQGPKGQKGERGEPGYSQSYIQSQSYQQSDG
RYGSQRRDVDVSRLAETLDYSNVAMKVTDYIKNQGLLQQYISDGSRRTNVRAIQGPPGPP
GPPGPPGHSRVIGSYGNVTADLMDFFRRYGTVTGPPGSPGPKGERGHPGPRGEKGDPGPP
GLPGIPAPLTIQIPHKVQKREAGDKGAVRQKRRRRQAGFD
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaaggcagatggagatctctggagaaaaggttctgacagaaaccgta
acctccaccacccgactgacttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcagtaccggagggctgggttttgagaagaatgtcttaacgcagaacagc
agtggaacctacttctcttcatcctctataggcgtgacgagtaactacagctcctcctca
ggaatctacctgggaggagattcctctggaggaggtgaaggtggcgggagctacatcgat
ggagagggctatgggagtggagcaggaggaggaggaggaggaagagtgggaagcagtgga
agcacttatctcgtgagctccgtgtcaaaggttcggtccagctcgtcgggtggtgccagg
agagctcagactgggggttcatcagtggggctgtcgccaggtttcagagagaggaagacc
ataaccagccgctcgggaggctacgacgggagttccagtggtaattcctccccagaattt
tcacgcaaagactatgggaactactgctccggtgccacaagagggaggagtgaaagcaga
gagagcgagatcagagccagattgcaaagtgcctccccatctgccggaagatgggcagag
ttggaagatgtgaagaagctgctgaagggacgctccagcagcgtcagtccaacccgctcc
tccgcctcggtcaccctgccagtgcctaaaaaagccagcgtggagaccaagaccgtctca
gtgggcactcaatcagcttcaactctatttgaacctattgttcagacgaatgggttcaac
actatcgatgtgtcgggcctctatgacagcagactgacatccaggcagcgtgactctggt
gtccaaacaggccaacacactgtcacagtgaagtcatgccactgtgacgctggcgtcaaa
tccagccagtatgacgttagcctgagctccggtcagtacgacaccggtctgaaatctgga
cgatatgacatgaatctcaaatcaggccagtatgacaccactgggagatcaggccaatac
gacaccctggattcagcctttcccactttctcctggtccacctccacgctgccctccccc
tccacgaccgtcgtcgccggcaacaccagcagctacacctatcagcttggtcaggtcagc
gccaacaacaggtcgggaggctccccgccgctcagtcctgtcccacagcaatctctatca
gtttacggttttcagaataatctggcacccacctctatcggtgcgctcaccaccagcggc
ggcaacgtaacggctaaccttggagggtatggcgtccaaaagaacgtgtcaaacggcagt
gctgtcataagctcagggatctctacagccactaggtcccaaaccgatgatgtctacaag
agagactacagatatatggcctctgaaaaggagaacgttcctgccaggagggagggagaa
atgctcattctggcaaaagacagtggcaagcagtttaccaccaccagcagcgctcatata
ggaggaggttcactttcaggagactcaataaagaaggagaagcttatttccagctacgtt
gacacgggcacgctgaaagcagagacaggcaattcatactatggatcatccggagtcctg
atgaaagataaggcaacctatgcagagattcacagagacagcggcatctttgggggagga
ggtctgtgctgctgctccgactcctgctgctcctggtggaagtggctgctgggcttgctg
ctcctctgcctgcttctgctcgggctcctgtttggcctcatcgcactggccgaggacgtg
aggaagctcaagaagcaagtgtcgtctctggagaacgacgtctcagtcgccaatgctcgc
actagtcggctgtcggggtcgggttcctccaatgacatcaacacctatgtgagcggcgga
gggggaggcgcaggcaccgacaacacactcatcctcggattcggaggtgcaggtggaggt
ggctcggattccaaaacgcaaatcagtattgctggtgctggtgctggtgcaggcggatct
gccagtcggaatgatgtggatgttggcgttgtgggtgtcggtggtgctggaggggctgcg
ggagctggaactagctccagtagcagtgctggtaccagcttgagcggcggtgctgggagt
gctggtactggcggtgtcagtgcaggcggtgccagttttggcggcggcaccggcggttcc
ggtaccagttttgtcattggcggcggcggtggggccggcagtggtgtcgggactggagtg
agtggaagatacatagatagcgccttccttcagatgaccgtccatcaaatgttgaagtca
gaaatgcagtcacaggcattcagaggcttcctggcatcctcagtgcagggagagagggga
ttacctgggcctaaaggggactctggattgaaaggggaagccggttttcctggaattcca
ggcgcaccaggtcctatgggacatgctggtcctgaaggtcccaaaggacagaaaggaagt
caaggtgagcatggagtggaagggccaccaggtattaggggccgcgaaggaccacctggg
cctagaggtgacccaggagctacaggctttggactcaaaggggataaaggtgaagctgga
tctgttggacctgctggggcccctggacccaaaggtgcacaaggaatccaagggttacaa
gggccacctggtcctcacggtttccgtggtgaggcaggactacctggaccaaaaggtgat
agagggctggctggattccaaggactcaaaggtgaaactggtgaaaagggagtcagaggt
ctgcaaggggaacctggtttaccaggaccagcgggagagaaaggctccaaaggatctatg
ggactttctggacaagatggtgaaaagggatcaagaggtgaccagggaccgtctggaccg
cctggactcaggggttctgctgggcctcctggagatgctggacttccaggaacaccaggc
cttcaaggaccaccaggaattccaggaaatcccggccgacctggagccaaaggtgaaccc
ggtcaagccggacgaatcatcaatgcagccggctcggcttctgttggcatcccaggacca
cctggacctgctgggcccccgggtcccgctggtcctccaggactatcaggtcccattggc
cctgctggtctgcctggcccacctggtcctaaaggtgacagaggatataagggagagcag
ggagagactggaataaccagggaaaccataagttcatctgcagcagggacgcagttcggt
gctggaggaagctcctctttccgtagcatacctgggccaccgggtccacctgggcctccc
ggacgtccaggcgactcaagacaaggacctccaggaccaccagggcctccagggcagcca
ggttatgggataccaggacctaaaggagaaaagggagatgtgggtttcgcatccagctca
ggaacatattattctggaccaccaggacctcctggacagcctggacctaaaggagcaaca
ggctctcctggaccccgcggatacacaggtgagcaaggcccacagggcgtgcctgggaca
ccaggtagagcaggaagctccattacgtatggaggaaacgcggttcctggaccaccgggt
ccaccggggcctcctggactcccagggatacctggagtgaagggagacactggagcgcca
ggaattccaggcgcgtcaagaggttcagtctcagtcacctctggccctgctgggccccca
gggcccccagggcctcccggctcgcctggttcctttgcttcctccactgagatgcggcag
tacatttcagactatctgagtagatacagactgagcagcctacctggccctccaggtcca
cctggacctccaggactcccaggaaccttctcagggtctatagacgacatctctactcgc
atcattgcatacctgcgacgttcagactcaggcttcagtatcggcgttcagggacctcca
ggaccgcccggtcctcctgggcccacctctggctccctgactgtcagcgctctcatcacc
atgcttcagagagatgacgtgagaagatatttgttgtctggaccacctgggcctcaagga
cctcctggaccaccaggggcctcaggaggactctccggcacttacagaatagaggagata
gccacttatgtcttcaatatcatgaacgagagggggattgcaagaggcccgccaggtcca
cgaggtctaccgggcccccccggagctccgggcgcaggaggctctggctacaccaccgct
accatcgactactcggctctgatccgaaattcagatttccgctcctggatcacttccgct
gtgcagcaaggtccttctggtcctccaggtgccccagggctgcctgggcctcctggtcct
caggggcccccaggggtctccacggcgacagtgtacggatcgggaggtcgtggctacagc
ttggaggacattcagcgctacctgcagggttctggattcagaggccttcctggacccccg
ggccctccaggtccccaggggccaccgggcgccgtcaccggatcagtgtcctacagcgga
aatctccctcgggagagcatccgcgctgaaattcaacagtatctgtctagcgacagtgtt
cgacgtaccatcgccgggcctccaggtcctcaaggtccaaagggtcagaagggagaacgc
ggagagcctggctactcccagagctacatacagagccagagctaccagcagagcgacggt
cgctacggctcccagcgcagagacgtcgatgtcagcaggctcgccgagacgctcgactac
tccaacgtcgccatgaaagttacagactacattaagaatcaaggcctgctgcagcagtac
atctccgacggttcacggaggacaaacgtccgagcaattcaaggacccccgggtcctccg
gggcctccaggaccgcccggccacagccgtgtgattggctcctatggcaacgtcacagct
gacctgatggacttcttcaggagatacggcaccgttaccgggccgccaggaagcccaggt
ccaaagggagagagagggcacccaggacccagaggagaaaagggtgatccaggacctcca
ggtttacctggaatcccagcgcccctcaccatccagattccacacaaagtgcaaaagaga
gaagcaggcgataaaggggcggttcgtcaaaagcgtcgtcgacgtcaagccggcttcgac
tga
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