Gambusia affinis (western mosquitofish): 122843234
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Entry
122843234 CDS
T07758
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122843234 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122843234 (cnot3b)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122843234 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122843234 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4140
Motif
Other DBs
NCBI-GeneID:
122843234
NCBI-ProteinID:
XP_043993767
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All DBs
Position
LG14:3531807..3583890
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AA seq
905 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANTNQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIENRKLIETQMERFKIVERETKTKAYSKEGLGLIQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSLQVESIRKIKDDVEYYRESSQDPDFEENDYIYDDLDLDEFPQPLLA
TSPSGPSHLEDEIFQNSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEISQSP
VKNGNPSSSLSSSSSSSSSSSSASGLTSSSLVSVAGAGIGSSGSSHLSAVGGPFSNTLAS
SYSNATQQPPHPSVQQQQAKNSPSSSAPINSSTSTNSHNASSASSSSSTQGLLTSNSLPQ
APSGPTATSNSLGLSLGPSLGKSSISTSPGLSGMPASLSNMVGLLSSSTPTPYAQAAASG
TASSGLPSSLGGVSSSATNSGVGAIGSGSIAVGGPTSSQGGMLGTASIVGSVGSGILGLG
SGQSGLQGSSLGPQSPIGSLVPGSGIGVIGSNGGTSASAGSGVGGGSSSLSGGPLSRQKQ
NGSTSHSAMVADSTTDSALNSATQSQSSQSSSLTSTANQLKDTGPSLLGSMGLSSSSPSP
ASYSEAKTTSGGSLQNGPLSYSQPPESIKPQEPLSRSMAERAAPSSGIEGDVSSLHLTSD
IFPSSTTATSGPPSAPQSSLSEVSILPSLGVCPLGPVPLSKDQLYQQAMQEAVWTHMPHP
SDSERIRQYLMRNPCPTPPFHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAA
KALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKKEGFTFEYRYLE
DRDLQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggggaaatagatcgatgtctgaaaaaagtagcggaa
ggagtggagcagtttgaagacatttggcaaaagcttcacaatgcagccaatacaaaccag
aaggagaaatatgaagcggacctcaagaaagagattaaaaagctgcagcgccttcgagac
cagattaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctaatagagaac
cgcaaactcatagaaacgcaaatggagcgctttaaaatagttgaaagagaaaccaagaca
aaagcgtactcaaaagaaggactcggccttatccagaaggtggatccggcgcagaaggag
aaggaagaggtcggcacctggctaacgaacacgatagacacgttgaacatgcaggtggac
cagttcgagagtgaagtggagtctctttcagtccagacgagaaaaaagaaaggagacaag
gagaagcaggaccggatcgaggagctgaaaaagtttatcgagaagcatcggtatcacatc
cgaatgctggagacgatactgagaatgctggacaatgactcactgcaggtcgaatccatc
aggaagatcaaggatgatgtcgagtactacagagagtcatcgcaggatccagattttgag
gagaacgattatatatatgacgatctcgacctggatgaattccctcaaccattactcgcc
acctccccatctggaccctcgcacttggaggacgagatcttccagaactccagcagcaca
ccgacctccaccacctcatcctcgccaatccctccttcacctgccacttgcactacggag
aactcagaagatgacaagaagaggggacgttcgacggacagtgaaatcagtcagtcaccg
gtgaagaatggaaatccctcctcgtcattatcttcttcctcctcttcctcctcttcgtct
tcttctgcctcggggctcacctcatcctctctggtttctgttgcgggcgcaggcatcggc
agctctggaagcagtcatcttagcgcagtggggggtcctttctccaacactttagccagc
agctacagcaacgccacgcagcagccgcctcacccgtcagtgcagcagcagcaggccaaa
aactcgccgagctcttcggctcccatcaactccagcacctccaccaacagccacaacgcc
tcatcggcgtcctcgtcatccagcacacagggactcctgacttcgaactccctgccccag
gcgccttcgggtcccacggcgacctccaacagccttggcctcagtctggggccctctctg
gggaaaagctccatctccaccagccccggtctgtcagggatgccggcgtccctaagcaat
atggtgggtcttctctcaagctccaccccaactccctacgctcaggcggccgcctcgggc
acggccagctcagggttaccaagctctcttggcggcgtcagcagctcagcaaccaacagc
ggcgtgggcgccatcggtagcggtagcattgcggtcggcgggccgacgtcctcgcaggga
ggcatgctcggcacggcttctatagtggggagtgtcggctcggggattctgggtttgggt
tcaggtcaatcgggattgcaggggtcttccctggggccgcagagccccatcgggagctta
gttcctggaagtggaataggagttattggaagcaacggcggcacctcagcatccgcaggg
agcggagtcggaggaggaagctcatccctgtctggtggaccgctgagcagacagaagcag
aatggtagcaccagtcacagtgctatggtagcagatagcacaacagactccgccctcaac
agtgccacccaatcacaaagcagccaatcctcatctctgacctccacagccaatcagctt
aaggacactggtcccagtttacttggctccatgggtttgtcatcatcctctccttctccg
gcgtcgtacagtgaggctaaaacaacgagcggaggaagccttcagaacggcccgctgtcc
tactcacagccacctgaaagcatcaagccccaggagcctctgagcaggtccatggccgag
cgagcagcgcccagctcagggattgagggagatgtgtcctccctgcaccttacttcagac
atcttcccaagcagcactacagccacctcggggcccccgtcagcacctcagtcctccctg
tcagaggtcagcatcctcccctcactgggcgtctgtccactggggccagttcccctttcc
aaagaccagctctaccaacaggccatgcaggaggcggtgtggacgcacatgccccacccg
tccgactcagagagaatcaggcagtaccttatgaggaacccctgccccaccccacctttc
caccaccagatgccaccacctcattccgacactgtagagttttaccagaggctttccacg
gaaacgttgttcttcatcttttactacctggagggcactaaggcccagtatctggcagcc
aaggccctgaagaagcagtcatggaggttccacacaaagtacatgatgtggtttcagagg
cacgaagagcccaagaccatcactgatgagtatgagcagggaacatacatttatttcgac
tatgagaagtggggccagcggaaaaaagaggggttcacctttgagtaccggtacctagaa
gaccgagacctccagtga
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