Gambusia affinis (western mosquitofish): 122843269
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Entry
122843269 CDS
T07758
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122843269 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122843269 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122843269 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122843269 (col1a2)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122843269 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
122843269
NCBI-ProteinID:
XP_043993847
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All DBs
Position
LG14:complement(18559443..18578780)
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AA seq
1351 aa
AA seq
DB search
MLSFVDTRILLLLAVTLYLTSCQSGPRGDKGPRGDRGYPGPNGKDGKPGLPGPPGPPGPP
GLGGNFAAQYDGAKAPDPGPGPPGLMGPRGSPGMPGPQGPQGQTGHAGEPGQPGNDGPVG
ARGPPGPPGKSGEDGNNGRPGKPGDRGAAGPQGARGFPGTPGLPGMKGHRGYTGIDGRKG
EPGSAGAKGESGASGSPGSSGLAGQRGQPGERGRPGPAGPSGARGSDGNVGPAGPAGPLG
AAGPPGFPGGPGPKGEIGAAGGTGPSGPQGSRGEPGSNGVVGPIGPPGNPGANGLNGAKG
AAGTPGVSGAPGFPGPRGGPGPQGPQGAAGPRGLSGDPGPQGVKGDSGGKGEPGNSGPQG
PPGTQGEEGKRGPTGEIGANGPAGSRGARGAPGSRGLPGSDGRSGPIGMPGARGATGAAG
PRGPPGDAGRAGEPGPAGLRGLPGSPGSSGPPGKEGPTGPAGQDGRAGPPGPTGPRGQPG
NIGFPGPKGPSGEPGKPGDKGSSGPTGLRGPPGPDGNNGATGPMGIAGGAGEKGEQGPAG
APGFQGLPGPAGSVGEAGKPGERGIPGEQGAAGPAGGKGERGNPGAAGASGAQGPIGPRG
PAGTPGPDGGKGEPGAAGAAGAAGHQGSAGIPGERGVAGAPGGKGEKGETGHRGPDGNPG
RDGARGPAGPPGPPGPTGANGDKGEVGSFGPSGPAGPRGPSGERGEVGPPGAPGFAGPPG
LDGQSGARGERGPAGAKGESGSAGPAGPAGQSGPAGPAGAAGPPGARGETGPPGLTGLPG
AAGRVGAPGPAGIVGPPGPSGNAGKDGPRGLRGDPGPAGPSGEQGMVGPPGPPGEKGPSG
ESGPAGLTGAPGPIGLLGIPGFVGLPGARGDRGTPGGAGAAGEPGRPGPPGPSGARGPPG
NIGMPGMTGPQGEAGREGSPGNDGPPGRPGASGFKGDRGEPGSPGALGLAGAPGPAGPTG
AAGRPGNRGEAGSSGPSGPAGPAGARGAPGPAGPRGEKGVAGDKGDRGMKGLRGHPGLQG
MPGPSGPPGESGPAGALGHAGPRGPSGPNGPPGKDGRAGTHGPMGPAGSRGPPGYVGPVG
PPGSPGLPGPPGPSGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIDNLLTPEGS
RKNPARTCRDIKLSHPDWSSGFYWIDPNQGCINDAIKVFCDFTTRETCIYAHPESIARKN
WYRSTDNRKHVWFGETINGGTEFTYNDETLSPQSMATQLAFMRLLSNQASQNITYHCKNS
VAYMDGESGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTTHTGEWSKTVIEYRTNK
PTRLPILDIAPLDIGGPDQEFGLDIGPVCFK
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatactcggattctgttgctgcttgcagtaacattatatctaaca
tcatgccaatcgggtcccagaggagacaaaggacctcgaggtgacaggggttatcctggc
cctaatggaaaagatggcaaacccggactccctggccctcctggccccccaggcccccct
ggactcggaggaaactttgctgctcaatatgatggtgcgaaagcccccgatcctggacct
ggacccccaggactgatgggacccagaggttcccctggaatgcctggaccccagggacct
caaggacagactggacacgctggtgaacccggacagcctggaaacgatggccctgttgga
gcccgtggaccccctggaccacctggcaaatctggagaagatggaaacaatggcagacct
ggcaagcccggagacagaggtgccgccggccctcagggtgctcgtggattcccaggaact
cctggacttccagggatgaagggacacagaggttacactggtattgatggacgtaaggga
gaacccggttctgctggcgccaagggcgagtctggtgcctctggatctcctggaagttct
ggactggctggacaacgtggtcagcccggtgagagaggtcgccccggccctgctggtcct
tctggtgctcgtggttctgatggcaatgttggacctgctggcccagctggtcctttgggt
gctgctggccccccaggctttccaggcggtcctggacccaagggagagattggagccgct
ggaggcactggcccatctggacctcagggatctagaggagagcccggatccaacggtgtt
gttggcccaattggtccccctggcaaccctggtgctaatggtctgaatggagccaaggga
gctgctggaacccccggtgtttctggagctcctggtttccccggaccaagaggaggacct
ggacctcagggacctcagggtgctgctggaccaagaggactttctggtgatcctggtcct
cagggtgtcaagggagacagtggtggcaaaggagagcctggtaactctggccctcagggc
cctcctggaactcaaggtgaggagggcaagagaggacccactggtgagattggtgctaat
gggcctgctggcagccgtggtgctagaggtgctcccggaagccgtggtctgcctggttcc
gatggaagatctggcccaattggtatgcctggtgcccgtggtgctactggtgctgctgga
cctcgtggaccccctggagatgccggtcgtgctggcgagcctggccctgccggtctcaga
ggtctcccaggaagccctggaagctctggacccccaggaaaggagggacctactggtcct
gctggacaagatggccgtgctggacctcccggcccaactggacctagaggccagcccgga
aacattggtttccctggacccaaaggaccctctggagagcccggcaaacctggagacaag
ggatctagcggccccactggtctgagaggaccccctggacctgatggcaacaacggagcc
actggccccatgggaatagctggcggtgctggtgagaagggagagcagggaccagctgga
gctcctggcttccagggtctgcctggacctgctggatctgtcggtgaggctggcaagcct
ggagaaagaggtatcccaggagagcagggagccgctggaccagctggtggcaagggagag
cgtggtaacccaggtgctgcaggagcttctggagctcagggaccaattggaccccgtgga
ccagctggaacccctggacctgatggtggcaagggagagccaggagctgctggagctgct
ggggctgccggacatcaaggatctgctggcatccccggtgagcgtggtgtagccggtgct
ccaggaggcaagggagagaagggagagaccggacacagaggccctgatggaaatcctggc
agagatggcgctcgtggccctgctggacctcctggccctcctggacccactggagccaac
ggtgataagggtgaggttggttcctttggaccctctggccctgctggacctcgtggaccc
tctggtgagcgtggagaggttggacctcccggagcccccggatttgctggaccccctggt
cttgatggtcagtccggagccagaggagagcgtggacctgccggagctaagggagagagt
ggatccgctggccctgctggacccgctggacagtctggacctgctggcccagctggcgct
gctggacctcctggtgctcgtggagaaactggccctccaggtctgactggtttgcctggt
gctgctggcagagttggtgctcctggccctgctggtattgtgggacctcctggcccctcc
ggtaacgctggcaaagacggacctcgtggtctccgtggtgaccctggtcccgctggtcct
tctggtgagcagggaatggttggaccacctggtcctcctggagagaaaggaccctccgga
gagtctggccccgctggacttactggtgctcctggacccattggccttctgggaattcca
ggattcgttggtctgcctggtgctagaggagatcgtggtacacctggtggtgctggtgct
gcgggagagcctggtagaccaggaccccctggtccatctggagcccgtggtccccctggt
aacattggcatgcctggtatgaccggacctcaaggagaggctggacgtgagggtagccct
ggtaacgacggaccccctggtcgtcccggtgcctctggattcaagggagaccgtggtgag
cctggatctcctggtgccttgggacttgctggtgctcccggacctgccggaccaactgga
gctgctggcagacctggaaaccgtggagaggctggctcatcaggtccttctggacccgct
ggacccgctggagccagaggcgccccaggacctgctggaccccgtggtgagaagggagtt
gctggagacaagggagacagaggcatgaagggtctccgtggacatcctggtctccaggga
atgcctggaccttctggacctcctggtgagagcggtcctgctggagcccttggacatgct
ggacccagaggaccttctggaccaaatggaccccctggtaaagatggtagagctggcaca
catggtcctatgggtcctgctggttcccgtggacctcctggatatgttggaccagttggc
cctcctggatctcctggtctgcctggacctcctggcccatctggtggcggatacgacgtc
tccggatacgatgaatacagagctgatcagccagctctcagagccaaggactacgaagtc
gatgccaccatcaagtctctcaacactcagattgataacctgcttacccccgagggatcc
agaaagaaccctgcccgcacctgccgcgacatcaagctcagtcaccccgactggagcagc
ggattctactggattgaccccaaccagggctgcatcaatgatgccatcaaggtcttctgc
gactttaccacccgcgagacctgcatctatgcccacccagagagcattgcacgcaagaac
tggtacagaagcacagacaacaggaagcacgtgtggttcggagagaccatcaacggcggt
accgagtttacctacaatgacgagaccctcagcccacagagcatggccacgcagctggct
ttcatgcgcctgctttccaaccaggctagccagaacatcacctaccactgcaagaacagc
gttgcctacatggatggtgagagcggcaacctgaagaaggccgttgtgctccagggctcc
aatgatgtggagctcagggccgagggcaacagccgcttcaccttctccgtgctggaggat
ggctgcactacacacactggtgagtggagcaagacagtgattgagtacagaacaaataaa
ccaactcgcctccccatcctcgacattgcacctttggacattggtggacctgatcaggag
tttggtttggacattggcccagtctgtttcaaataa
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