Gambusia affinis (western mosquitofish): 122843556
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Entry
122843556 CDS
T07758
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122843556 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122843556 (smarcc1b)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122843556 (smarcc1b)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122843556 (smarcc1b)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122843556 (smarcc1b)
PBAF complex
122843556 (smarcc1b)
GBAF(ncBAF) complex
122843556 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
Exonuc_VII_L
DUF919
Motif
Other DBs
NCBI-GeneID:
122843556
NCBI-ProteinID:
XP_043994308
LinkDB
All DBs
Position
LG14:19297706..19305470
Genome browser
AA seq
937 aa
AA seq
DB search
MSGGTNLGFPGINQALAHRKKDSSPSARFWESPDTLTQLEVVRQWIGKHYKKYVLVDAPS
CQVLAAVTLQLLQFQEDAFGRQAPNPALTKLPAHCFLDLQPGGGLCHILGTAYKFKVEQG
WRRFDLQNPSRTERNVEMFGVIEKALIQNNCVSIPVVFIDPTVDLELSSTLTGIIIKHKG
AITEDSIMATHHIYGSLASTEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSSSDVEGDV
EDVPHVERPWRVHAGWVLDTDVFNEWMNEEDYCVNERNLPLILRQRIHLQEDQDSKSTPF
KKRRRSPSPSADGRKKGRKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEVVILPKNVNLKK
DSENTPVKGGIMADLDDQEDDFPGREEDEGRSEIPRLSEGEDNVTEQTHHIIIPSYTSWF
NYNSIHSIEKRALPEFFNGKNKSKTPEIFLAYRNFMIDTYRLNPQDYLSSTSCRRNLTGD
VCALIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQHKPLQVSA
SQHMLNFPEKSREKPLDYQNFGLRTDIYARKHPKTKGANAGREWAEQETLLLLEALEVYR
DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSENPVMSTV
AFLASVVDPRVASAAAKAALEEFSRAHEDSLYKTSDPSNQPEQTDATEAERLDSSSHQVP
VRLDGVKMEPGVPKVDGDLVKREHSESILTEEGEVRGEDGENRGEGDDGRRGMELDLVEG
SVPTAAAAALSSAASKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDRE
KEALEQQRQQLLTERQTFHTEQLQQAEMKIRQQREQQGQPGYTMQHSGQSVANRMVPGGN
GQTMAPRHPGAPNGMYPSSQPDGIPSAQPTPPSSSHS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggaacaaacctcggttttccggggataaaccaagcgttggcacatcgcaaa
aaagacagcagtccctctgctcggttctgggagagtccggacactttaacccagctggag
gtggtgcgacagtggatcgggaagcactacaaaaagtatgtgctggtggacgctccatct
tgtcaggtcctggctgcagtcaccttgcagcttctccagttccaggaggatgcctttggc
agacaagctcccaaccctgctcttacaaagcttccagcacattgcttcctggacttgcaa
ccaggcggtggactctgccacatcctcggcactgcttacaaattcaaggttgaacagggc
tggagaaggtttgacctgcagaatccgtcaagaactgagaggaacgtcgagatgtttggt
gtgattgaaaaagctttaatccagaacaactgtgtctccatccctgtggtatttattgac
cctactgttgacctggagctgtccagcacactcaccggcatcatcatcaaacacaagggt
gcaattactgaggacagtataatggccactcatcacatatacggctcacttgcttctaca
gaggaggatgagtggatgcgtcccgttatgcgaaaggataaacatgttttggtccactgg
ggcatgcaccctgacagttatgacagctggctgtcttcaagtgatgtggaaggagacgtc
gaagacgtgccgcacgtggagaggccgtggagggttcatgctggttgggttctggacaca
gacgtgttcaatgagtggatgaatgaggaggactattgtgtaaatgagaggaatctgccg
ctcatccttcgacagcgaatccacctacaagaagatcaggactccaagtccactccgttc
aaaaagagaagacgctcaccctctccttccgctgatggcagaaaaaagggaaggaaaggg
agaaggcgtggccaacaggaggaggagccagaagaagacctgaccaaagacatggaggat
ccaacgcctgtgccaaatatggaagtagtcattctacccaagaatgtgaacctaaagaaa
gatagtgagaatacgccagtgaagggaggcatcatggctgaccttgatgatcaggaagac
gactttcccggaagggaagaagatgagggaagaagcgagatccctcgcttatcagaggga
gaggacaatgtcactgaacaaactcatcatatcataatcccaagctacacgtcatggttc
aattataacagcattcactcgatagagaaacgtgctctccctgaattcttcaacgggaag
aacaaatcgaaaactcctgaaatcttcctggcgtatcgtaacttcatgatcgacacgtac
cgactcaacccccaggactacctcagctcaacgtcctgcaggcgcaacctcactggagac
gtctgtgcccttataagggttcatgcctttttagaacagtggggtttgatcaactaccaa
gtggatgcggagagccgacccctccctatgggacctcctccaacccctcatttcaacgtc
ctggccgacacgccgtccgggctggcacccctgcagcacaaacccctccaggtgtccgcc
tcacagcacatgttgaatttcccagagaagagcagagagaaacctttggactaccagaac
tttggtctgcgcaccgacatctatgccaggaaacacccaaagactaaaggagcaaatgca
ggacgagaatgggcagagcaggagacattgttgctgttggaggccttagaagtgtacagg
gacgactggaacaaagtatcagagcacgtgggctccagaacgcaggatgaatgcatccta
cactttctacgtttgcccatcgaggacccttacctggaggactcgtcggcctctctgggg
ccgctggcgtatcagcctgtgccttttagccaatcggaaaaccccgtcatgagcaccgtg
gccttcctggcgtctgtggtagatccgcgtgtggcgtcagccgcagcgaaggcggcgctg
gaggagttttccagagcacacgaagactcgctgtataaaacctctgatccatccaaccag
ccagaacaaacagatgcaacggaagcggaaagacttgactccagctcccatcaggtccct
gtgaggctggacggagtcaagatggagcctggtgtgccaaaagtggacggagatcttgtt
aaaagagaacatagtgaaagtattctgacggaggagggtgaagtcaggggggaggatggt
gagaacaggggagaaggggacgatgggaggagagggatggagctggacctggtggaggga
agcgttcccacggcggcagcagcagctctgtcgtctgctgcctcgaaggccaagcactta
gcagcagtagaagagaggaagatcaagtctctggtggctctactggtggagacgcagatg
aagaagctggagatcaaactgagacactttgaagagctggaaaccatcatggacagagag
aaggaggctctggagcagcagcgccaacagctgctgacagagaggcagactttccatact
gagcagctgcaacaggcagagatgaagattcgccagcagagggagcagcagggccagccg
ggttacacaatgcaacattcaggccagtctgtggccaacagaatggtacctggaggaaac
ggtcagacgatggcccctcgacaccccggagctccaaatgggatgtacccgtcgtcgcag
cctgatgggataccgtctgctcagcccactcctccgtcatccagccacagctga
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