Gambusia affinis (western mosquitofish): 122843941
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Entry
122843941 CDS
T07758
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71 isoform X1
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122843941 (trim71)
04121 Ubiquitin system [BR:
gaf04121
]
122843941 (trim71)
Enzymes [BR:
gaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122843941 (trim71)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122843941 (trim71)
Ubiquitin system [BR:
gaf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122843941 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
ANCHR-like_BBOX
SGL
zf-RING_5
zf-C3HC4
Ig_GEX2_N
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
122843941
NCBI-ProteinID:
XP_043995024
LinkDB
All DBs
Position
LG14:complement(25727806..25774023)
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AA seq
913 aa
AA seq
DB search
MCHRSTDVFVCFIQAGKAGPHRGPLSFTISSNFINKTVHVRTSSNVTPSHGRRERACGTP
PSDRRERACGTHPSSVSSLRTEMASFPDSDLQTCPLCKELCGSSAPISSSSSTSSSSSHT
SGSSNHATKRLHVLPCLHTFCRQCLEGQRSPSDPLKLRCPTCDHKVSISEAGVDSLPSSN
FLFSNLLDVVVSSEDQIQNKNGHHHLGGLIGGSSGFHPSHGGLLHAQHMGEPQCSSCDEE
NPATSHCLDCQEYLCDNCVRAHQRVRLTKDHFIERLGESLHLSRVNSNSSGTGQPGVSVS
LAQSLQNNFALLSLFQDRMSFCQHHDSEVFLFFCETCSVPICRECSVGRHMGHTFVYLQD
AVQDCRAITIQLLADAQQGRQAVQLSMEKVQAMAEQVEIKAKVVQTEVKALVLRHKKALE
ERECELLWKVEKIRQVKAKSLYLQVEKLHQSLTKLDSTIAAVSQILDEGHHLDVLLARER
MLTQIHELKTLRGLLQPQEDDRFMFTPPDQALYIAIQSMGLISSSAFAPVTKAHGEGLKN
VLRGKPVSFTVIGYDHDGEPRLSGGDPVSAMVMSVADGSPSAVEVTDHQNGSYTVSYLPK
TEGEHLVSVLVCNQHIQGSPFKVIVKSGRSYGSLGSQVSSFGCEGEGDGQLCRPWGVSVD
KEGYVVVADRSNNRIQIFKPCGAFHHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNH
RVQVFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRVQLFAPDGSFLN
KYGFEGALWKHFDSPRGVAFNHEDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFL
RPQGVAVDQENRIIVADSRNHRIQVFEPNGNFLCKFGTQGSGYGQMDRPSGVAVMPDGVI
VVVDFGNNRILKF
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcaccgcagtacagatgtttttgtttgcttcatacaggcaggcaaagcgggacca
cacagaggaccattgtccttcaccatttcctccaactttatcaacaaaaccgtgcacgta
cgcacgtcttccaacgtgaccccctcccatggccgtcgggagcgagcatgcggcacaccc
ccctctgaccgtcgggagcgagcttgtggcacacacccctcttctgtgtcctctctcagg
acggaaatggcttctttccccgattctgacctgcagacctgtccgctctgcaaggagctg
tgcggctcctctgctcccatctcctccagctcctctacctcgtcctcctcttcacacacc
tctggctcctctaaccacgccaccaagaggctccatgtcctgccctgcctgcacaccttc
tgcaggcagtgtttggaggggcagcgcagccccagcgacccgctgaagctacgttgcccc
acctgtgaccacaaggtctccatctctgaggccggagtagactccctgccttcctccaac
ttcctcttcagcaacttgttggatgtggtggtgagctcggaagatcagatccagaataag
aacggtcaccatcacctcgggggcctgatcgggggctcgtccgggttccacccgtcacac
gggggtctgctgcacgcgcagcacatgggggagcctcagtgcagctcctgcgacgaggag
aacccggccacgtcccactgcctcgactgccaggagtacctctgtgacaactgcgtgcga
gctcaccagcgggtgcggctgaccaaagaccacttcatcgagcgcctgggagagagcctc
cacctgagccgggtcaactccaacagcagcggcacgggccagccgggggtgtccgtgtcc
ctcgcccagtccttgcagaacaactttgcgctgctgtccctgttccaggaccggatgagc
ttctgccagcaccacgacagcgaggtgttcctgttcttctgcgaaacctgctcggtgccc
atctgcagggagtgcagcgtgggccgtcacatgggccacaccttcgtctacctgcaggac
gccgtgcaggactgcagggccatcaccatccagctgctggcggacgctcagcagggtcga
caggctgtccagctaagcatggaaaaagtccaagccatggcggaacaggtggagatcaag
gcgaaggtggtgcagaccgaagtgaaggctctcgttctgagacacaagaaagccctggag
gagagggagtgtgagctcctgtggaaggtggagaagatccgtcaggtgaaggccaagtct
ctgtacctgcaggtggagaaactccaccagagtctgaccaagctggatagtactattgct
gctgtgagccagatactggatgagggccaccacctggatgtgctgctggccagggagaga
atgctgacccagatccatgaactcaagactctcagggggctgctgcagccgcaagaggac
gaccgctttatgttcacgcctccagaccaggctttgtacatagccatccaatccatgggc
ctgatcagcagcagcgcctttgcccccgtcaccaaagcccacggcgaaggtctgaaaaac
gtattgcgcgggaagcccgtgtccttcaccgtcattggatacgatcacgacggcgagccg
cgcttgtccggcggtgacccggtgtcggcgatggtgatgtctgtcgcagacggctctccg
tccgcggtggaggtgacggatcaccagaacggatcctacaccgtcagctacctgccgaaa
acggagggggagcacctggtgtctgtgttggtgtgcaaccagcacatccagggcagcccc
ttcaaggtgatagtcaagtccggacggagctacgggtccctcggctcccaggtgtcgtcc
ttcggatgtgagggggagggagacggccagctgtgtcgcccctggggcgtcagcgtggac
aaggaaggatatgttgtggtggcggatcgcagcaacaaccgcatacagatcttcaagcct
tgcggtgccttccaccataaatttggctccttgggttctcggcctggtcagtttgatcgt
ccagccggggttgcctgtgacagtcagagacggatcattgtggctgataaggacaatcac
cgtgtgcaggtgtttacatttgagggccagttcctgctgaagtttggggaaaagggcacc
aagaacgggcagttcaactatccctgggacgtggccgtcaactcggagggtaaaatcttg
gtctcggacaccagaaaccaccgcgtgcagctctttgcccccgacggttctttcctcaac
aagtacggcttcgaaggggctctatggaaacacttcgactcccccagaggggtcgccttt
aaccacgaagaccacctcgtcgtgaccgacttcaacaaccaccggctcctggtcatccgg
ccggactgccagtcggctcgcttcttgggctcggagggcacggggaacgggcagtttctg
cgcccccagggcgtcgccgtggaccaagagaaccgcatcatcgtggccgactcccgcaac
cacaggatccaagtgttcgagcccaacggaaactttttatgcaaatttggcactcagggg
agtggctacggacagatggaccgcccctctggggtggccgtgatgcccgacggagtcatc
gtggtcgttgactttggaaacaaccgcattctcaagttctaa
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