Gambusia affinis (western mosquitofish): 122844190
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Entry
122844190 CDS
T07758
Name
(RefSeq) polyadenylate-binding protein 1A-like
KO
K13126
polyadenylate-binding protein
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03015
mRNA surveillance pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122844190
09123 Folding, sorting and degradation
03018 RNA degradation
122844190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122844190
03041 Spliceosome [BR:
gaf03041
]
122844190
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122844190
mRNA cycle factors
Stress granule specific factors
122844190
Spliceosome [BR:
gaf03041
]
Complex C
Other components
Complex C specific factors
122844190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_7
RBD_RDR6
RRM_occluded
YflT
PABC_AtC3H46
POP1_C
Motif
Other DBs
NCBI-GeneID:
122844190
NCBI-ProteinID:
XP_043995353
LinkDB
All DBs
Position
LG14:complement(12187835..12196619)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGDDMDDEKLRELFSKYGNALSTRVMTDDSGKSRGFGFVSFER
HEDAQKAVDEMNGKDLNGKPIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPAAGQMAQLRPSPRWTTQGVRPQHFQNMTGAMRVSAPRPQTFSTMRPTNQVPRMMST
QRVAAQTVAPRPPAAATATNAPVRGVPQYKYAAGVRNPQQHITSQPQVNLQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSAVVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagttatcccatggcctccctgtatgtcggggacctgcatcca
gatgtgaccgaggccatgctgtatgagaaattcagcccagccggagccatcctctcgatt
cgggtctgtagggacatgatcacccggcgttccctcggatacgcctatgtcaacttccaa
cagccggcggacgctgagcgcgctctggacaccatgaacttcgacgtgatcaaagggcgg
cccgtacgcatcatgtggtcgcagcgtgatccgtctctgagaaaaagtggcgtgggaaac
atcttcatcaagaatcttgacaagtcgattgacaacaaggctctttatgacaccttctct
gctttcgggaacatcctgtcctgcaaggtggtttgtgatgagaatggctctaaaggctac
ggctttgtgcattttgagactcaggaagctgctgaacgagccattgaaaaaatgaacggc
atgctgctcaatgacagaaaagtgttcgttggccgtttcaaatctcgtaaggagcgcgag
gctgagttgggcgcccgggcaaaagagtttactaatgtttacattaaaaactttggtgac
gatatggacgatgagaaattgagagagctcttcagtaaatacggaaatgcgctgagtacc
cgggtcatgacagatgacagcggaaagtccagaggcttcggcttcgtcagctttgaaaga
cacgaagacgcgcagaaggcagtggatgaaatgaacggaaaggacttgaacgggaagccc
atctacgtcgggcgtgctcagaagaaggtggaacgacagacggagctgaagcgcaaattt
gagcagatgaaacaagaccgtatgactcgctaccagggtgtcaacttgtatgtgaagaac
cttgatgatgggattgatgatgagcgcctgcggaaggagttctccccatttggcaccata
accagtgccaaggtcatgatggaaggcggccgcagcaaaggcttcggttttgtctgcttc
tcgtccccggaggaggcgaccaaagccgtgacggagatgaacgggcgcatcgtggccact
aagccgctgtacgtggctctggctcagaggaaagaggagcgccaagcccacctgaccaac
cagtacatgcagcgcatggccagcgtccgcgccgtgccaaatcccgtcatcaacccctac
cagccggccccgccctccggctacttcatggctgccatacctcaggcccagaaccgcgcc
gcctactacccagctgcgggccagatggctcagctgcggccgagcccacgctggacgacc
cagggggtccgacctcaacactttcagaacatgaccggtgccatgcgtgtgtcagcgcca
cgtcctcagaccttcagcaccatgcggcccacaaatcaggtccctcgcatgatgtccacc
cagcgtgtcgccgctcagaccgtggctccccgaccgcctgccgcagccacggcaacaaat
gctccagtgcgcggagttcctcagtacaagtacgccgctggggtccgcaaccctcagcag
cacatcacctcccagccacaggtcaatttgcagcagcctgcggtccatgttcagggacag
gagcctctgaccgcctccatgctggccgccgctccgccgcaggaacagaagcagatgctg
ggtgagcgtctgttcccactgatccagaacatgcatcccagcctggcaggcaagattact
ggcatgctgctggagattgacaactcagagctgcttcacatgttggagtccccagagtct
ctccgctccaaggtggatgaggctgtggctgtgctgcaggcccaccaggccaaggaggcg
gctcagaagactgtgactaactcagctgttgtcccaagtgtttga
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integrated database retrieval system
