Gambusia affinis (western mosquitofish): 122845028
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Entry
122845028 CDS
T07758
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122845028 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122845028 (lig3)
Enzymes [BR:
gaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122845028 (lig3)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
122845028 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
122845028
NCBI-ProteinID:
XP_043996919
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All DBs
Position
LG15:complement(3982603..3998976)
Genome browser
AA seq
1001 aa
AA seq
DB search
MQRHLIFLVQKIVCVGRQPFGTLIRFKQPSTLCRTFVISSTSDQRKSLASHKHQLQKRHA
PWTSIRRCFSEWPDMSEQRFLVEYAKRGTAGCKKCKDKIQKGIVRIGKIVPNPFSESAGE
MKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQDEDKELINKHVSDLMAKVNASPK
KKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTAAKAGSSSSPSSSGSPGLSASPAAKAGS
SSALSTQLCDAQHKDCLFREFRKLCAMVAENNSYNSKTQIIEKFLKKGTGGDKFHGDLYL
TVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQEDMVRDLEQGDVSETVRIFFEESKYFP
PAAKSLLTIQEVDASLMRLAQLTKEDEQQSELESIGKKCTSNDLKCIIRLIKHDLKMNAG
AKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDASSGSGPRKLLTVEASLMTPVQPML
AEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNTFSYFSRSLKPVLPHKVAHFKEYI
PQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNGVSL
MERPLCERRKFLDDNMVEVPNRILFSEMKHVTRAGDLAEMITRVIREGLEGLVLKDVKGS
YEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCT
VTKCSGGYDDAMLARLQKELDVVKISKEPGKIPSWLKIVKNYYPDFIIRDPEQAPVWEIT
GAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLRELFRISKENCDFKVMVGPS
TSDDKGSSGGDSGGNSPSSSSSRSAPAKKTSNSTPTKPKAVKSKPRTPTSEASSAKKVKK
SEESVQSNGQNKESSQLLQPRNDKTLLDIFSGVKLFLPVSVQDFDRLRRYFVAYDGDLVP
DYDSASATHTLGDPEGGSRAQRVSPSWIWECIRKRRVVPPC
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggcatcttattttcttggttcagaagatcgtctgtgtgggccgacaacctttt
ggtacactaatacgatttaaacaaccttcaacgttgtgcagaacatttgtaatttcatct
acctctgatcagcgaaaatccttagcatcccataaacaccaacttcaaaaaagacacgct
ccctggacttcaattcgccggtgcttctcggagtggccagatatgtcggaacaacgcttc
ctggtggaatacgccaaacgtggcacggcggggtgcaagaaatgcaaggacaagatccag
aagggcatcgtgcgcatagggaaaatcgtgccaaaccctttcagcgagtctgctggcgag
atgaaagagtggtatcacgtgaagtgcatatttgagaagctggagagggcaagagccacg
acgaagaagatcgaggacctgacggagctggagggctgggaggagctgcaggatgaggac
aaagagctcattaataaacacgtttcagacctgatggccaaagtcaatgctagtcctaaa
aagaaggtccaggcaaagttgaacaccactggtcagcttatggcgccccctgctgaccct
tctgtcaatgctccgaggaagttttctggcttcacagctgcgaaggctggcagctccagc
agccccagcagctccggcagccccggactgtcggcgtccccggcagccaaagccggctcc
agcagtgccctgtccactcagctctgcgacgcccagcacaaagattgtctcttcagggag
tttcgcaaactctgcgcaatggtggctgaaaacaacagctacaacagcaagacacagatt
atagagaagttcctgaagaagggcacaggaggagataaatttcacggagatctttacctg
acggtgaagctgctgctgccaggcgtggttaaaagtgtttacaacctgaacgataagcag
atagtaaaactcttcagccgcatattcagatccaaccaggaggacatggtgcgagatctg
gagcagggcgacgtatcagaaacggtgaggattttcttcgaggagagcaaatactttcct
cccgctgccaagagcctcctaacaatccaggaagtagatgcgtccctgatgcgcctcgcc
cagctcacaaaggaggacgagcagcagagcgagctggagagcatcggcaaaaaatgcacc
agcaacgacctgaaatgcatcatcaggctaattaagcacgacttgaagatgaacgctggc
gccaaacacgtgttggacgcggtagatccaaacgcgtacgacgccttcaaagcctcccgt
aaccttggcgacgtgatcgagagggttctgaggaaccagcaggacgcctccagcggctct
ggacccaggaagctcctgaccgtggaggcgtcgctcatgacgcccgtccagccgatgctg
gccgaggcgtgtaaatccatcgagtacgccatgaagaaatgtcccaacgggatgtactcc
gagataaaatacgacggcgagcgcgttcaggtccacaagaacggaaacaccttcagctac
ttcagccgcagcctgaagccggtgctgccccacaaggtggcccatttcaaagagtacatc
cctcaggctttccctggcggccacagcatgattctggacgctgaagtcctgctgattgac
acaaagaccagcaaaccgctgccgtttggcactctgggtgttcacaagaaagctgccttt
caagacgccaacgtgtgtctgtttgtgttcgactgcatttacttcaacggtgtgagtttg
atggaacggccgctctgcgaacgcaggaagttcctggacgacaacatggtggaagtccca
aacaggatcctcttctcagagatgaagcacgtcacgagggcaggagacctggcggagatg
ataactcgcgtcatcagagaaggactggaaggcctggtgctgaaagacgtaaagggaagc
tatgagccaggcaagcgacactggctgaaggtgaagaaggattatttgaacgagggagcg
atggctgacacagcagacctggtggtgcttggtgccttctacggaaaaggatcaaacggg
ggcatcatgtctagctttctgatgggctgctacgacccggattcgaagaagtggtgcacg
gtgaccaagtgctccggaggatacgatgacgccatgctggcccgactccagaaggagctg
gatgtggtcaaaatcagcaaggaacccgggaaaattcccagctggttgaaaattgtcaag
aactattatcctgatttcattatccgtgaccctgagcaagcaccggtctgggagatcacc
ggcgcagagttttccaaatcagaaatgcacaccgccgacggcatctccatccgcttcccc
cgcatgacgcgaatccgcgatgacaaggactggaagacggccaccaacctgcaccagctc
agggagctgtttcgcatttcgaaggagaactgtgactttaaagtgatggtgggtccttcc
acttctgacgacaaaggctcatcgggaggagacagcgggggaaactcgccgtcgtcctca
tccagcaggagcgctccggccaaaaagacgagtaacagcacccctaccaaaccaaaggct
gtaaaatcaaaaccccgtactcccacctctgaggcctccagcgccaagaaggtgaagaag
agcgaggagagcgttcagagcaacggacaaaacaaagagtcttcccagctgctgcagccg
aggaacgacaagacgctgctggacatcttcagcggggtcaagctcttcctccccgtctcc
gttcaggacttcgacagactgcggcggtactttgtggcgtacgacggggacctggtgccg
gattacgactccgcctcggctacacacacgctgggcgacccggaggggggcagccgggcg
cagagggtttctcccagctggatctgggaatgcatccgaaagcggcgcgtcgttcctccc
tgctga
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