Gambusia affinis (western mosquitofish): 122845993
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Entry
122845993 CDS
T07758
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03013
Nucleocytoplasmic transport
gaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122845993 (pnn)
03015 mRNA surveillance pathway
122845993 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122845993 (pnn)
03041 Spliceosome [BR:
gaf03041
]
122845993 (pnn)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122845993 (pnn)
Spliceosome [BR:
gaf03041
]
Complex C
Other components
EJC/TREX
122845993 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
122845993
NCBI-ProteinID:
XP_043998565
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All DBs
Position
LG16:11583949..11589795
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AA seq
672 aa
AA seq
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MAVAVRSLQDQLEKAKESLKNVEDNIRKLTGRDPNESRPGQLRRLSGPMVGLGGGRGRGI
NLLRRSLSDMGSGGPPAKQRDIEGALLRLAGDQRARRDVRHDSDAEDDDDVKKPALQSSV
VATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSSEKLKRRSEIEQK
LEVQAEAERKKVENEKRELFEERRAKQTELRLLEQKVELAQLQEEWNCHNNYLVKYIRTK
TKPHIFYRPGKMCSATQKLLEESTKKLNAVFEERREAFAEHLSKMESRPRRQPNRDQDGS
SASRMDRPAEGKPAGQVEKRRGKRGESRREEDEDEDEDDEEEREKESDRKEMGGGDAEEG
EKEGLVKLEDVEEEVMEVREEGSKEEAGEEQKDKSEKAASPESEEMEVEKEDKGKEEEVE
TDRKQESTEIQEEKTPDVQSCEAAVSSLEIPDSSDEPPQSLAAGEPAAQSPGTETASPSQ
EPQKASAALAQDPTSPTQDSMAPESSIQDSTAENQTEERKSKGDEEKGPQKLLDSKEVDA
PSKEEGEVQGRGRKKEKDAKKHRSRSNSSSSSSSGSSSSGSSSSSSGSSRSSSSSSSSSS
STSSSRSRDGGKRKRRPSDRGRDKKKEERSRLKSGGKDSAEGRKRRSEEKKSRPSRSDRE
HKNRGDRKDKRR
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggctgtgcggagcttgcaggaccagctcgaaaaagccaaagaaagcttgaaa
aatgtggaagataatattcgtaaactgaccgggcgggaccctaatgaatcacgaccgggt
cagctgcgtcggctcagtggccccatggtaggcctgggaggaggtagaggcagaggaatc
aatctcctcaggcgcagtctctcagatatgggaagcggcgggccccctgccaagcaaagg
gacatcgaaggagctctactgaggctggcaggtgatcagagggccaggagagacgtgcgt
catgacagtgacgccgaggacgatgacgatgtcaaaaaaccggcgttacagtcgtctgta
gtagctacctccaaggagagaacacgccgagacctcattcaggatcaaaccatggatgaa
aaggggaaacagaggaatcggcgcatgtttggcctgctgatggggacactgcagaaattc
aagcaagaatcgaacgtctcatctgagaagctaaagcgacgttcagagatagagcagaag
ctcgaggttcaagctgaggccgagaggaaaaaagtagagaatgaaaagcgagaactgttc
gaggagagaagagccaagcagacagagctgagactgctggaacagaaagtagaattagct
cagctgcaagaggagtggaactgccacaataattacctggtgaaatacattcgcaccaaa
accaagcctcatatcttctaccggcctggaaaaatgtgctccgcaactcagaaactcctc
gaagaatccaccaagaaactcaatgctgtgtttgaggaaaggcgtgaggcatttgccgaa
catttgagcaagatggagtcgcgtccccggcgccagccgaaccgcgaccaggatggcagc
tcagcctcaaggatggaccgcccggcggagggtaagccagcaggtcaggtagagaagcgg
agaggtaaaaggggggaatccaggagggaggaagatgaggatgaggatgaggatgatgag
gaggaaagggagaaggagagtgacaggaaggagatgggagggggcgatgcagaggagggg
gagaaagaggggttggttaaactagaagatgtggaggaggaagtgatggaggtgagagag
gagggaagcaaggaggaggcaggagaggagcagaaggataagagtgagaaggcagcaagt
ccagagtcagaggagatggaggtagagaaggaagacaagggtaaggaggaagaggtagaa
acagacaggaagcaggagtccacagaaatccaagaagaaaagactccagatgttcagagc
tgtgaagcagctgtaagcagcctagagatcccagactccagcgacgagcccccacagagc
ctcgctgcgggagaaccagcagcacagtcacccgggacggagaccgcctctccaagtcaa
gaaccccaaaaggcctctgctgcccttgctcaggatccaaccagtcctacacaggacagc
atggctccagagtccagcatccaggactccacagcggaaaaccagacagaggagagaaaa
tcaaagggggacgaagagaaggggccacaaaagctgcttgattctaaggaggttgatgcc
ccttcaaaggaggaaggggaggtgcaaggcagagggaggaagaaggagaaagacgcaaag
aaacatcgcagtcgtagcaacagctcttcctcttcctcgtctggatcctcctccagcggt
agctcttcctcatcctccggatccagccgatcctcgtcatcgtcttcatcctcatcgtcc
tcgacgtccagcagccgcagcagagacggcggcaagcgaaagaggaggccgtccgataga
ggcagagacaagaagaaggaggagagaagtcgactgaagtcaggagggaaagactcggcg
gagggaaggaagagaaggagtgaggagaagaagagcaggccgtcccggagcgatagggag
cataaaaatagaggagacaggaaggacaagagacgctga
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