Gambusia affinis (western mosquitofish): 122846306
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Entry
122846306 CDS
T07758
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gaf03036
]
122846306 (dicer1)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122846306 (dicer1)
microRNA pathway
RISC loading complex
122846306 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
ResIII
DEAD
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
122846306
NCBI-ProteinID:
XP_043999110
LinkDB
All DBs
Position
LG16:complement(20066558..20088812)
Genome browser
AA seq
1851 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALERNTIVCLNTDSGK
TFIAVLLTKELSHQIRGSYQENAKRTVFLVNSVSSVIQQAAAVRTHSDLQVGEYSDWKEA
SAWSDQRWSQEISTNQVLVMTCHIFLPVLRSQILPLSKINLVVFDDCHLAITEHPYCDIM
KLFEECTCGPRILGLTASILNGKCDPSELEQKIQNLERILKSNAETATDLVVLDRYTSQP
REVVLDCGPYVDRSGLSSRLQVELDEALLFLNDCNIPFSREDRDPTFISKQILSDCRAVL
LVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPLERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDLELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKSFEEDLTTYKAIEKILRNKCSKSVEAGEFEADQSLDDDNL
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVETGDGRFQSTLFLP
INSPLRVPVKGPIMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETNVPGRPGSTKRRQCYPKAIPECLQDSYALPEQTYFLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLSSAQLDLITRMH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSDTLDMDFMFMEDIEKSEARTGIP
TTKYTKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATKAGVGVQTLPPDFR
YPNLDFGWKRSIDIKTFCPCPESCSEEADCKHQNLTFLALPSSHQGPLPAPVEGPCTGNL
TNGTTVTNDSHRDEHLHQHDSCQGCGGSSEWKHDATSVPAQTPLSPSRPQPSHECTSGRT
SHHSNEATSDCTRTAPSPDLKAGPQVTDSPRNLGPNPGLILQALTLSNASDGFNLERLEM
LGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPP
VNWLPPGYVVNQDKSSSDRVDSEEAREELVSNGRSGNDFDDEDRDDEGEDVDEDELMLKD
EPKDDVNMEDDLEYYKEHIRFIDNMLLGSGAFGKKISISGFGPPLSPAPGSSPSYDWKAP
KKPAQHSEQAHCGSAAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGTELGKQ
SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPVQRGSHTALL
VPAVELMYGWLKIPPRCMLDHPDAERTLQHLISGFENFERKINYTFQNKAYLLQAFTHAS
YHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVK
YDYHKFFKAISPELFHVIDDFVQFQLEKDEMQGMDSELRRSEEDEEKEEDIEVPKAMGDI
FESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAE
RTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQTN
NT seq
5556 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctgcagctcgtcacccctgctacttcacccatggggcccttctttggtctg
ccgtggcagcaggaggccatccatgacaacatttacacgcccaggaaatatcaggtcgaa
cttctcgaagcagctcttgaacgcaacactatcgtctgcttgaacacggactcagggaag
acctttattgcagtactcctaactaaagagctctcccaccaaatccgagggagctaccag
gaaaatgccaaaaggacagttttcttggtgaattcagtgtcgtctgtaattcagcaagct
gctgcagtcagaactcactcggacctccaggtgggggaatactcagactggaaggaggcg
tcagcttggtcggatcagagatggagtcaggagatatccacaaatcaggtgctggtgatg
acgtgccacatcttccttcctgttctgaggagtcagatcttacctctgtctaaaatcaac
ctggtggtgttcgatgattgtcacctggcgatcacagagcacccttactgtgacatcatg
aagctgtttgaggaatgcacttgtggaccgcgaatactgggcctcactgcttccattctc
aatgggaagtgtgacccatccgaactggagcagaagatccagaatctagagagaatcctg
aaaagcaatgctgaaacggcgactgacctggtggtccttgacaggtacacgtctcagccg
agggaagtggtgctggactgcggtccctacgtggacaggagcggcctttcatcccgtttg
caggtggagctggatgaagctctcctcttcctcaacgactgcaacatcccgttttccaga
gaggacagagatcccacattcatctccaaacagatcctgagtgactgccgtgccgtgttg
ctggttctgggtccttggtgtgcagacaaggctgcaggtatcatggtgcgagagctgcag
aagtatatcaaacacgaacaggaggagctcaacagaaagttcctgctcttcaccgacacc
atcctgaggaaggtgcacgctctgtgcgaggagcacttctcccccgcctccctggacctc
aagttcgtcacgccgaaggtgctgcgcttgcttgagatcctgcacgagtacaagccgctg
gagcgccagcaatttgagagtgtggagtggtacaacaaccgcaaccaggacaattacgtg
tcgtggagcgactcggaggatgaggacgaggatgaagaggtggaggccaaagagagacca
gaggccaactttccctccccgttcaccaacatcctgtgtgggatcatctttgtggagcgg
cgctacacagctgtggttctgaaccgtctaatcaaagaggcagggaagcaggacctggag
ctggcttacatcagcagcaacttcatcaccggccacagcatcgggaagaaccagccgagg
aacaagcagatggaggtggagttcaggaagcaggaggaggttctcagaaagttcagagct
cacgaaaccaacctgctgatcgccaccagcattgtagaggaaggtgtggatattccaaag
tgcaaccttgtggtccgcttcgacctgcctacagagtacaggtcctacgtccagtccaag
ggtcgagcccgggcccccgtctccaattacatcatgctggccgactctgagaggacaaag
agcttcgaggaggatctgaccacctacaaggccatcgagaagatcctgaggaataaatgc
tccaagtccgtggaggcgggagagtttgaggcagaccagagtctggacgacgataacctc
ctccctccatatgtcctgcggtctgaagacggaggcccacgggtcaccatcaacacggcc
atcggacacatcaacaggtattgcgctcggctgcccagcgacccgttcacacacctcgct
cccaaatgtaaaaccgtggagacgggtgatggacgcttccagtccaccctcttcttaccc
ataaactctcctctgagagtccccgtcaagggtcccatcatgaactgcgcccggctagct
gagaaagctgttgcactgctttgctgtgaaaaactccataaaataggtgagctggacgac
cacctgatgcctgttgggaaagagacggtgaagtacgaggaggagctggaccttcatgat
gaggaggagaccaatgtcccgggtcgacctggctccaccaagaggaggcagtgctaccct
aaagccatacccgagtgtctgcaggacagctatgccctgccggagcagacctacttccta
tatgtgatcgggatggtcctcaccacgccgctccccgatgagctgaacttccgcaggaga
aagctgtacccccctgaggacacgactcggtgcttcggcatcctgactgccaaacccata
cctcgaattcctcatttcccggtgtacacccgctcgggcgaggtgaccatctccattgag
ctgcagaagtcgggcttcacgctcagctcagcccagctggacctcatcacccgcatgcat
cagtacatcttctcccacatcctccgcctggagaaacctgcactggagttcaaacccacg
ctggctgactcagcttattgcgttctacctctgaatgttgttggagactctgacactctg
gatatggactttatgttcatggaggacattgagaagtctgaggcccgaacaggcattcct
accactaagtacaccaagcagaaccccttcatcttcaagctggaggactaccaggatgct
gtgatcattccaaggtatcgtaacttcgaccagccacatcgtttctacgtcgctgacgtc
tacaccgacctgacgccgctcagcaagttcccatcgccggagtacgagaccttcgctgag
tattacaaaacaaaatacaacctggacctgtccaacctgaaccagccactgctggatgtc
gaccacacctcgtccagactcaacctgttgactccccgacacctgaaccagaaagggaag
gctttgccactgagcagcgcagagaagaggaaggccaagtgggagagtctgcagaacaaa
cagattctggttccggagctgtgtgccatccatcctattcccgcctccctgtggaggaaa
gccgtgtgtctgcccagcatcctgtaccgcctccactgcctgctgacggccgaggagctg
cgagctcagactgccaccaaagctggagttggggtgcagaccctcccccccgacttcagg
tatccaaacctggactttggctggaagagatccatcgacataaaaacgttctgcccttgt
cccgaatcctgcagtgaagaagccgattgtaagcaccaaaatctcaccttcttagcactt
cccagcagtcaccaggggcccctcccggcccctgtagaggggccctgcacggggaacctg
actaacggcactaccgtgacgaacgacagccacagagacgagcaccttcaccaacatgat
agttgccaaggctgcggcggcagctctgaatggaaacacgacgctacctcagttcctgcg
cagacgcccctcagccccagtcgtcctcagcccagccatgaatgtacctccgggaggacc
tcgcaccacagtaatgaagctacctcagactgcactcgtacagcaccttcccctgacctc
aaagccgggccccaggtcacggactcgcccaggaacctgggccccaaccccggcctcatc
cttcaggccttgactctgtccaacgccagcgacggcttcaacctggagcggcttgagatg
ctcggcgactccttcctgaagcacgccatcaccacctatctgttctgcacctaccccgac
gcacacgaagggaggctcagctacatgcgcagcaagaaggtgagcaactgtaacctgtac
cgtctggggaagaagaaagggcttcccagccggatggtggtgtccatctttgaccctccg
gtcaactggttgccgcctggatacgtggtgaaccaggacaagagcagctcagacagagtg
gactcagaggaggcaagagaggagctggtgtccaacgggcgatctgggaacgacttcgac
gacgaggacagggacgacgagggtgaagacgtggacgaagacgagctgatgctgaaggac
gaaccgaaggacgacgtcaacatggaggacgacctggaatactacaaggagcacatccgt
ttcatcgacaacatgctgctggggtccggtgcgttcgggaagaagatctccatcagcggc
ttcggcccgccgctgagcccggccccaggctcctccccctcctatgattggaaggccccc
aagaagcccgcccagcactctgagcaggcgcactgcggctcggcggccgaggagttcgac
tacagctcgtgggacgccatgtgctacctggaccccagcaaagcgggcgaggaggacgac
ttcgtggtgggattctggaacccgtcggaggagaactgcggcaccgagctcgggaagcag
tccatctcctacgacctgcacacggagcagtgcatcgcagacaagagcatcgccgactgt
gtggaggctctgctgggctgctacctgaccagctgtggagagcgggccgcccagatgttc
ctctgctcgctgggcctcaaggtgctgccggtgcagagagggtctcacacggcgctgctg
gtaccagctgtggagctgatgtacggctggctgaagatcccgccccgctgcatgctggac
catcctgacgcagagcgcacgctgcagcacctcatctcggggttcgagaactttgagagg
aaaatcaactacacatttcagaacaaggcttacctgctgcaggccttcacccacgcctcc
taccactacaacaccatcacagattgctaccagcggctggagtttcttggcgacgcgatc
ttagactacctcataacgaagcacctttacgaagaccctcggcagcactcgcctggcgtg
ctgacggacctgcgctcggcgctagtcaacaacaccatcttcgcctcgctcgccgtcaaa
tacgactaccacaagttcttcaaggccatctctccagagctgttccacgtcatcgacgac
tttgtgcagtttcagctggagaaggacgagatgcagggcatggactctgagctgcgacgc
tccgaagaagacgaagagaaggaggaggacatcgaggtgcccaaggccatgggggacatc
tttgagtctctggctggagccatctacatggacagcaggatgtccctggagacggtgtgg
caggtctactatccaatgatgaggcctctcatcgagaaattctctgccaacgttcctcgc
tctccagtccgggaactcctggagatggaaccagaaactgccaagtttagcccagcggag
cgtacctacgacgggaaggtgcgtgtgacggtggaagttgtcggaaaggggaagttcaaa
ggagtcggccgcagctaccggatcgccaagtcagcggcggcccgccgagctctacgcagc
ctcaaagccaatcaacctcaggtccaaaccaactga
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integrated database retrieval system
