Gambusia affinis (western mosquitofish): 122846414
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Entry
122846414 CDS
T07758
Symbol
rpap1
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122846414 (rpap1)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
122846414 (rpap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
122846414
NCBI-ProteinID:
XP_043999307
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Position
LG16:complement(21693083..21717895)
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AA seq
1392 aa
AA seq
DB search
MLQRPKPTDSEADLLREQERFLTSGAPSAASMVRRPDKRRGEAGDAEGTDCSKNERNQKD
VVTIEDLPDQLPSLTPAPPKKSRFKASRVTFEDEDAGQRLDRHDTHISAVLSRIVERDTS
CAPISLPAFTGLAFPKVLHRSEASTQVPSLSSKGKRSIFARQIAAQRLKEDKTLKPSSAE
PRDQIRCSDSGSRLVSGEGLQGPDSSGETLRIHQENQAKLHAMSKSEILEEQKKLLSQLD
PSLVEFIRSRKSQSAVSPGSPSEHAAAADTRSQEDPPAEHPESGESCRTAAGSVQSPVEA
EMEEENQVKSPPLTEDDLPVKPQKEWIHMDTLEPEKLEWMRDLPSPRKKGTKKAMQARFD
FTGTLIPPSEDLPTHLGLHHHGDEPERAGYSLQELFLLSRSQLIQQRTLALNTLACILTK
ARGGEYQSVLKGSVTSTLLDAGLLFLLRFALDDSIEGVMSAAMHALKALLVCAEDEECLD
CTFSWFRGLASFPLLPSSQEEEDEEDEGLDESMRETPKEKEERKSDYDVARQDVIKGLLR
MKLLPRLRYILEVVRPSPRVVQDVLHVLTRVTRHSSWSATQVLDCPRLMETVMSEFLPTS
WTSPSSLSPPSVYGRPVADAMKLLRVLATSGRHACARLLNSLGVRERLSCLLSAEPSELL
MEPNEALRIATEAYRLWAVAAAYGQACQLYIDLYPALVRTLQALNSILSTSDPLQLRRLS
ALLCLLTQVTHTAGCHQELQAGMVRAQGQECPPPPPVSWGHVTGLQPLLLGHLKGLVKGL
DNPVQRDGVLTLIPAYLVYLQAHYQHLSRQTCFKPVETLQDLELLTSEVLLPLLCHDVVQ
NLMRNLRSSSVVCNLQSSPQSPEITSCLPGLACSGWRDRPGLAAPSSPFPLLTGLGLVFE
TITEIHKGLSRKFSGLLLSEPVIGYLRSCSQATPTLSHSRSWLLRHEHHFLYLLLRLAHR
LVPVEPEVAKHASLYHQVALVLLPWLLPGSEYLAHELLSTVIFSKDFISEGHSGGPEAVE
LGELKLHTQQQTSPSLQTVGALLREACTQLPSIRGCYLTQLAHLEQSVITSRDLFLGRNA
WIGSHLLPELTGPTLPSDWPFIPLIGLYERAGVSDGGGLAVEELPHGSLQAVTHCLQWLL
LLEVWREEALKVVLPVAKLARLSCVFLCSSDLFLERPVQKLTWGLFRLLTRGSRLDSLDL
DVPPPGLASFQDLYSALLAQYEAVSFGDRLFGCWVLLPLQRRYSASLRLAVFGEHVGMLR
SLGVTLDQLSVPIERFTSPPEDSLPLLRLYFRALVTGTLKLSWCPVLYVVALSHINSFVF
SQDAAVQEVEATRLNMLRKIYYLTDEVLKNHLLLFRLTQNHLQIGFDMYEQLPAIRAKRL
ETVLGLQDDSGA
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaacgtcccaaaccgaccgactctgaggcggacctcctgagggagcaggagcgc
ttcctgacctctggagcgccgtcggctgcctctatggtccgccgtcccgacaagaggagg
ggagaggctggagacgctgagggaacggactgcagcaagaatgaacgaaatcagaaggac
gtggtcaccatagaagatcttccagaccagctgccctctttaacaccagctcctccaaag
aagtctcgatttaaagccagtcgtgtcacttttgaggacgaggatgccggccaaaggctg
gacagacacgacacccatattagtgctgttctctccaggattgtggagagagacaccagc
tgtgccccaatatctctaccagcgtttacaggcctggcttttccaaaggttctgcaccgc
tcagaagccagcactcaggttccatctttgtcatccaaagggaagaggagcatctttgct
cgtcagattgcagctcagagactaaaagaagacaaaacactgaaaccatcttcagctgaa
cccagagatcagatccgctgttcagattctggttctaggttggtgtccggtgaaggcctt
cagggtccggacagttctggagaaaccctgaggatccaccaggagaaccaggcgaagctc
cacgcgatgtccaaatctgagattctagaggagcaaaagaagcttttatctcagcttgat
cccagcctggtggagtttatcagatctcgtaaatctcagagtgccgtgtcgcctggttcc
ccgtctgaacacgcagcagcagcagatacacgcagccaagaagatcctcctgctgaacac
ccagagagcggagaatcctgcagaaccgctgccgggtcggttcagagtccagtggaggcg
gagatggaggaggaaaaccaggtgaaatcaccacctttaactgaggatgacctgccggtg
aaaccccagaaggaatggatccacatggacaccttagagccggagaagttggagtggatg
agagatttgccttcacccagaaaaaaaggaaccaaaaaggccatgcaggctcgttttgac
ttcactgggaccctaattcctccctcagaagatctgccgacccacttaggcctgcaccac
catggagacgagcctgagcgagccggctactccctgcaggagctcttccttctgtctcgc
agtcagctcatccagcaaagaactctggctctcaacactcttgcctgcatcctcactaaa
gcgcgaggtggagagtaccagtcggttctgaaaggcagcgtgacgtccacgctgctcgat
gccggtctgctcttcctgctccgctttgcgctggacgacagcatcgaaggagtgatgtct
gcagccatgcatgcactcaaagcactgcttgtgtgtgcagaagatgaagagtgcttggac
tgcacgttctcctggtttcgtggcctggcgtctttcccgctgctgccatcctcacaggag
gaggaagatgaagaggatgaagggctggatgaaagcatgagggagacacccaaggagaaa
gaagaaaggaagagtgattatgatgtcgccaggcaggatgtaattaagggtttgctgagg
atgaagctcctccccaggctgcgctacattctggaggtggtccgaccgtccccgcgcgtg
gttcaggacgtcctgcacgtcctgacgcgcgtcacacgacactcctcatggtctgccacc
caggtgttggactgtcctcgtctgatggagacggtgatgtccgagtttcttcccacttcc
tggacgtctccatcgtccctcagtcctccgtctgtttacggacgtcctgtggccgacgcc
atgaagctgttgagggttttggcgacatctgggagacacgcatgcgccagattgttaaac
tccctgggagtgcgggaacggttgtcctgcctcctgagtgccgagcccagtgagctcctg
atggagccgaacgaggccctccggatcgccactgaggcctacaggctgtgggctgtagca
gccgcctatggacaagcctgccaactgtacatagacctgtacccagccttggtgcggacg
cttcaggctctcaacagcatcctgtcaacctcagatcctctgcagctgcgtcgtctctcc
gctctgctgtgtctgctcacacaggtcacacacaccgctggctgccaccaggagctgcag
gctggcatggtcagagctcagggacaggagtgtccccctcctcctcccgtgtcctgggga
cacgttactggtttgcagccgctcctgttgggacatttgaagggcctagtcaaaggcctc
gataatccagtacagagagacggagtcctgactctgatacctgcttatctagtctaccta
caggctcactaccagcacctctccagacagacctgcttcaagccagtggagactcttcag
gacttggagctcctgacgtcggaggttctcctgcctctcctgtgtcacgatgttgtacaa
aacctgatgaggaatctcaggtcctcctcggttgtgtgtaaccttcagtccagtcctcag
agcccagagatcacctcctgcctccctggtttggcatgttcaggatggagggatcgtcca
ggactggctgctcccagctctcccttccctctcctgactggactgggactcgtctttgaa
accatcacagagatccataaaggtctcagtaggaagttctcaggcctcctgctgtcagag
cctgtgattggttacctgcgcagctgcagccaggccacgcccactctgtcccacagcagg
tcctggctgcttcgccacgaacatcacttcctctacctgctgctccggctggcgcacaga
ctggttccagttgagcctgaagtagccaaacatgcctcgctttaccaccaggtggcgctg
gtgcttcttccctggttgcttccaggcagtgaatacctggcacacgagctgctttccact
gttatcttcagcaaggactttatatcggagggccacagcggcggaccagaggctgtggag
ctcggggaactgaagctccacacccagcagcagacgtctccttccctccagactgtcggc
gctctcctgagagaagcctgcacccagctgccctccatacgaggctgctacctcacccag
ctggcccacctggagcaatcagtaatcacatcccgagaccttttcctggggcgcaacgct
tggatcggatcccatctgctcccggagctcaccggccccacgctcccgtctgactggccg
ttcatcccgctgatcggcctgtacgagcgggccggggtgtctgacggcggagggctggcg
gtggaggagctgcctcatggatctctgcaggcggtgacccactgtctgcagtggctgctg
ctgctggaggtctggagggaagaagctctgaaggtcgtccttcctgtcgccaaactcgcc
cgcctttcctgcgtcttcctctgttccagcgatctgttcctggagagaccagttcagaaa
ctgacctggggtctgttcagactgctcaccagggggtccagattggactctttggacctg
gatgtgcctcctccaggtctggcctccttccaggatctgtactcggccctcctggcccag
tatgaagccgtgtcgtttggagaccggctgtttggctgctgggttctcttgcctctgcag
aggaggtacagcgcctccttgaggctggctgtttttggagaacatgtggggatgctgaga
tcgctgggtgtcactctggaccagctgtccgtccccatcgagcggttcacctcgccgcct
gaagactccctccctcttcttcgtctgtactttcgcgctttagtgacgggaaccctgaag
ttgtcctggtgtcccgtcttatatgtggttgccttgtctcacatcaactcctttgtcttc
tcccaggatgccgcggtgcaggaggtcgaagcaactcgactgaatatgctgaggaagatc
tactacctgactgatgaggtgttgaagaaccacttgctccttttccgtctgacccaaaac
cacctccagatcggctttgacatgtatgaacagcttcccgccatcagggcgaagcgctta
gagaccgttctcggtctgcaggatgacagcggagcctga
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