Gambusia affinis (western mosquitofish): 122846486
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Entry
122846486 CDS
T07758
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gaf04121
]
122846486 (shprh)
Enzymes [BR:
gaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122846486 (shprh)
Ubiquitin system [BR:
gaf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122846486 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-C3HC4_3
TPR_10
TPR_12
Motif
Other DBs
NCBI-GeneID:
122846486
NCBI-ProteinID:
XP_043999431
LinkDB
All DBs
Position
LG16:complement(6376919..6390747)
Genome browser
AA seq
1658 aa
AA seq
DB search
MSSRRKRAPPVRVDEESKRRLEWNMLEDRKNEAVQEEDQTPSSSSCLSGTACTSFLSAIE
DITEEDACARSVQLPDELPSTSLDSSGAASASLALSVVPALKLGHVWKALIGEFSIRPAW
LPSDYEQRSFLAYRTGKQLYLSYSSCDESPGPQWSPEEDGCAVECSLGRIPFEDLDWLQK
RRVVQLCHQTKEQEVKVGIYLLETGLGKPEFLSEGNARLKKATQIMQKLMEYFYDFIIPE
VVENEEEECDTDLERQNVEELYDYVRHQHQKENQDVTYDVQHKVLIPVLRPYQSQAVNWM
LRREKYNISTPKEHSLHFLWREVVTLCGKKLFYNPFTGCLIREFPLAGIEWPGGILADEM
GLGKTVEVLALILFHTRQNLEQEALTLPVGTSVNYFVPPRPLEVKATRCKPEAQPKIKTS
HPAVRVMLLNAIKEMRTGKGASVNAVFTYIRATYGYDLLKNRNHIKKTLAKLINEGCVDR
VKGRGLAGSFKLGKNYKETKKILSAASKLIFRPAESTPRKTFQRRAKEKAEAALQNSLSD
DQTDLSPALDRRDTEGKEQKQWEENANKRADLEDGVTSMGSTAVSLQLSRGKLESATQEI
PRADRGEEASGTDSQDETETPTRASVVPFNTADYRFECICGELGIIDYKPRVQCMNCQLW
QHAECVNYKEESLTTTPFYCPHCLVAMKPVSTGATLIISPSSICHQWVEEINRHIRSSSL
RVLVYQGVKKHGFIQPRMLAEQDVVITTYDVLRSELNYVDIPHSNSKDGRRFRNQKRYMA
VPSPLVAVEWWRICLDEAQMVECPTAKAAEMALRLASVNRWCVSGTPVQRGLEDLYGLTL
FLGVDPYWVKYWWEQLLYRPYRRGNTEPLYNVIAQILWRSAKKDVIDQIQIPPQTEEVHW
LHFSPVEGHFYHRQHEVCSQDALVKLRKISDWSLKLGSLDRRTVNTILYPLLRLRQACCH
PQAVRGEFLPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRGEFVEA
AEMYREVLRSSEEHKGRLKTDSLQRLHATHNLMELLNAKHRGIPPTLRDDRLGEEAEQLR
QHYMTKYDSEVGDAHQALQPVLQNIKELKRKVNLNSPWWLEVIQMSTRCSTDEDLVSRVK
NELTSSYKQQANKLSMADKFRDACGLQFLLTTQMQDLMKSQKTVRDAVKSLEGPASKEVI
EEATVCHLRPMRLPLNNCVFCKADELFTDYESKLFAHTVKGQTAIFEEMIEDEEGLVDDR
LPTTSRGLWAASETERTLKAILSFAKAKRMDLELVEEGNVFMELFENWKKEYKVLHEYWM
VLRNHVSAIDELGMATERLRVRLPDEPKPKLLHIIEPHEVEQNRVKLLNDQAVAKSQLQK
KLGQFLYLTNLEKSQDKSSGELNPEPCPICARPLGQEWAVLTCGHCFCNECIAIIVEQYS
VGSRRRAIKCAICRQTTSHSEISYVFTTQSSSHDQDIPVKGSHSTKVEAVVRTLKQIQMN
DPGAKCLVFSTWQSVLDIIAKALLDNALEFSQINGIHKFQENLSSFKYDEKINILLLPLH
TGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQAM
LKTAEKSHTSTAMKHSEAAVLTVADLADLFTEDTEPLE
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcgaaggaagagggcccctcctgtgagggtggatgaagaatcaaagaggaga
ctggaatggaacatgctggaggaccggaagaacgaagccgtccaggaagaagaccagact
ccgtcctcctcttcctgtctgtcaggtaccgcctgcacctcctttctctccgccatagaa
gacatcaccgaggaggacgcctgcgctcgttcggttcagttgccagatgaacttcccagc
acgtccctggacagcagcggcgccgcctccgcctctctggcgctctccgtggtgccggca
ttaaagctgggccatgtctggaaggctcttatcggggagttcagcatcaggccggcttgg
ctgccgtctgactacgagcagagatcttttctggcgtaccggacgggcaagcagctctac
ctcagttacagcagctgtgatgagagcccggggccgcagtggagccctgaggaggacggc
tgtgccgtggagtgcagcctcggcaggatcccattcgaggacctcgactggctgcagaag
aggagggtggtgcaactctgccaccagaccaaggagcaggaagttaaggtaggaatttac
ctgctggaaacggggctggggaagccagagttcctcagcgagggaaacgctcggctaaag
aaagcgactcagataatgcagaagctgatggaatatttctacgatttcatcattcctgaa
gtggtagagaacgaggaggaggagtgcgacactgatctggagaggcagaacgtggaggaa
ctctacgattacgtgaggcaccagcaccagaaggagaaccaggatgtaacatacgacgtc
cagcacaaggttctgattcccgtcctcaggccctatcagagccaggccgtcaactggatg
ctgaggagagagaagtataacattagtacacctaaagaacactccctgcatttcctgtgg
cgagaggttgtgactttatgtggcaagaagttgttctataatccctttactggctgctta
attcgagaattcccgctggccggaatcgagtggcctggtgggatcctggccgatgagatg
gggctcgggaaaacggtggaggttttggcacttattctcttccatactcgtcagaatctg
gagcaggaagccctcacgttgcctgtgggaacatctgtgaattactttgttcctcctcgt
ccgttggaagtgaaagctacacgctgcaagcctgaagctcagccaaaaataaaaacgtcc
cacccagctgtacgtgtgatgttgctaaatgcaataaaggagatgcggaccggcaaagga
gcctcggtcaacgctgtgttcacctacatccgggctacttacggctacgacctcctgaag
aaccgcaatcacatcaagaagacgctcgcgaagctgataaacgaaggatgtgtcgaccgc
gtaaagggccggggtctggcgggttctttcaagttggggaagaactacaaagaaacaaag
aaaatcttgtccgcagcgtccaaattgatcttcagaccagcagagagcacgccaaggaag
acgtttcagaggcgcgcgaaggagaaagcggaggcggctctccagaactccctctcagac
gatcaaacagatctgagccccgcattggaccggcgtgacacagaggggaaagaacaaaag
caatgggaggaaaatgcgaacaagagagcagacctggaagatggtgtgacgtcgatgggt
tccaccgcggtatctttacagctttctcggggtaaacttgaatcggccacacaggagatt
cccagagcagacagaggagaagaagcctctgggacagattcgcaggatgagacggaaact
cccaccagagcgtccgtagtcccgttcaacaccgccgattaccgcttcgagtgcatctgt
ggagagctgggcatcatcgactacaagccgcgtgtgcagtgtatgaactgtcagctgtgg
cagcacgcagaatgtgtgaactataaggaggagagcctcacaacaacgcccttctactgc
cctcactgcctggtggctatgaaaccagtgtccactggtgccacgctcatcatttctccc
agctccatctgccaccaatgggtggaggagatcaaccgccacatcagatcctcctccctg
cgcgtgctggtgtatcagggcgtgaagaaacacgggtttatccagcctcggatgctcgcc
gagcaggacgtggtcatcaccacctacgacgttcttcgctctgagctcaactacgtcgac
atcccccacagcaacagcaaggacggccgacgcttccgcaaccagaagcgctacatggcg
gtccccagccctctggtggccgtggagtggtggcgcatctgtctggacgaggcccagatg
gtcgagtgtcccactgccaaggctgcagaaatggctctgcgcctcgcctccgtcaaccgt
tggtgcgtcagcggcactcccgtccaacgaggccttgaagatctgtacggcctgacgctg
tttcttggagtggatccatactgggtgaaatactggtgggagcagctgctttatcgcccc
tatcgccgtggaaacacagaacctctgtacaatgtgattgctcagatattgtggcggtcg
gctaaaaaggacgtcatcgatcagattcagatcccccctcagacagaggaggtgcactgg
cttcacttttctcctgttgagggccatttctaccatcgccagcacgaggtctgctcccag
gacgctctggtcaaactcaggaaaatctctgactggagcctgaaactgggcagcctggac
cggcgcaccgtcaacaccattctgtacccgctgctgaggctgcgccaggcctgctgccat
ccgcaggccgtgaggggggagttcctgcctctgcagaaaagcaccatgacaatggaggag
ctcctcaagtccttgcagaagaaatgtcgagtggagtgcgaagaagctcacagacagctg
gtgtgcgcactcaacggcttggctggaattcacatcatccgaggcgagtttgtagaggct
gcagagatgtatagagaagttctgcgctcatcagaggagcacaaaggccggctgaaaact
gattcgttacagcgacttcatgccactcacaacctaatggagctgctcaatgcaaagcat
cgtgggattcctccaacactcagagacgaccgactcggtgaagaggctgagcagctgcgg
cagcattacatgaccaagtacgactcggaggtgggcgacgcccatcaggccctgcagcca
gtgctgcagaacatcaaagagctgaagcgcaaagtgaacttaaactccccctggtggttg
gaagtcatccagatgtcaacccgctgttccaccgatgaagatctggtgtcccgtgtgaag
aatgagctaacttccagctacaagcagcaggccaacaaactctccatggcagacaagttc
cgtgacgcttgcggtctgcagttccttctcaccacacaaatgcaagatctaatgaagtca
caaaagactgtccgggacgcagtgaagagtcttgaaggcccggcttctaaggaagtgatt
gaagaggccacagtttgccatcttaggccaatgcgactgccactcaataactgcgtgttt
tgtaaagctgacgagctcttcactgattatgaatccaagttgtttgctcacacagtgaaa
ggccagacggccatcttcgaagagatgatcgaggacgaggaaggcctggtggacgaccgc
ctccccaccaccagtcgcggtctgtgggcggcgagtgagacggagcgcactctgaaagcc
atcctgtcgttcgccaaagctaagcgcatggatctggagctggtggaggagggcaacgtg
ttcatggagctgtttgagaactggaagaaggagtataaggtgttgcacgagtactggatg
gtgctgcgcaatcacgtgtcggccattgacgagttgggcatggcgactgaacggctgcgt
gttcgtctgcctgacgagccgaagcccaaactgctgcacattatagaaccgcatgaagtg
gagcagaacagggtcaagctcctgaacgaccaagccgtggccaagtctcaactccaaaag
aagcttggacagtttctgtatctaaccaatctggaaaagtcacaggacaagtcatctgga
gagctgaacccagagccgtgccccatctgtgctcgtcctctggggcaggaatgggccgtg
ttgacttgcggccactgcttctgtaacgagtgcattgccatcattgtggagcagtacagc
gtgggctcaaggcggcgagccatcaagtgtgccatttgtagacagaccacttcccactcg
gaaatctcctacgtgttcactacccagtcgtccagccacgaccaggacataccagtgaag
ggaagccactctaccaaagtggaggcggttgtgagaacgctaaagcagatccagatgaac
gatcccggagccaaatgtctcgtcttttcaacgtggcagagtgtcctggacatcatcgcc
aaggccttgttggacaacgccctggagttttcacaaatcaatggaattcataagttccag
gagaatcttagttctttcaaatacgatgaaaagatcaatattctcctcctcccactccac
actggctccaatgggctgaatatcatcgaagcaacacacgtgttgctggtggaaccaatc
ctcaacccagctcacgaactccaggctatagggagggtgcaccggattggccaaacaaag
ccgacatttgtacacagattcctgatcaaatccactattgaggagcgaatgcaagcgatg
ctgaagacggcagaaaagagtcacaccagcacagccatgaagcattcggaggctgccgtt
ctgacggtcgctgacctggccgacctgtttacggaggacactgaacctctggagtga
DBGET
integrated database retrieval system
