Gambusia affinis (western mosquitofish): 122846524
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Entry
122846524 CDS
T07758
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03022
Basal transcription factors
gaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122846524 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
122846524 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122846524 (ercc3)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122846524 (ercc3)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
122846524 (ercc3)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122846524 (ercc3)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122846524 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
122846524
NCBI-ProteinID:
XP_043999481
LinkDB
All DBs
Position
LG02:complement(21952176..21961967)
Genome browser
AA seq
783 aa
AA seq
DB search
MGKRDKGDREKKSKKRHYEEEDDEDDVTGSEPQEAIPAAAGKQVDESGTKLDEYGAKDYR
AQMQLKKDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQHLLQDNLIRDCRLRGADGSDPELITEVIHSKSAISKAVQDKGGTSTSQQPIDGQTS
NQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAEKVMEWMRTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKMYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPFIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSREEQQQLLQKVLAAS
DLDAEEEVVAGEVGVRPQFSRRVGTMSSMSGADDTVYMEYQSRSNKASAGSKNVHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaagggataaaggagatagagagaagaaatccaagaaacgtcactatgaggag
gaagatgatgaagatgatgtgaccggcagcgagcctcaggaagccataccagctgctgca
ggaaagcaggtggacgagtctgggacaaagctcgacgagtatggagccaaagactaccgc
gctcagatgcagctcaagaaagaccattcttcacgcccactctgggtggctccagatgga
cacatctttctggaagcgttctctccggtgtataagtatgctcaggatttcttagtggcc
atcgcagagcctgtgtgcagacccaaccacgttcatgagtacaagctgaccgcgtactcg
ctctacgcagcggtcagtgtggggctgcagacttcagatatcgtggagtacctgcagaag
ctcagcaagacatctgtaccggatggcattgttcagtttatcaaactttgcactgtgagc
tatgggaaagtcaagcttgtgcttaagcacaacaggtattttgtagaaagtgcattccct
gatgtcatccagcatctcctgcaggacaacttgatccgtgactgtcgcctgcgcggtgcc
gacggatcggaccctgagctcattaccgaggtcatccacagcaagtcagcgatttctaaa
gctgtccaggacaaaggaggtacgtccacctcacagcagcccatcgatggacaaacctcg
aaccagcaggtccccgaggacatcttcagctactatgagcagatggataaagaggaagaa
gaggaagaggagacccagacagtgtcttttgaaattcgccaggaaatgatagaggagctg
cagaagcgatgtattcagctggagtaccccctcctagctgagtacgactttcgaaatgac
actgtcaaccctgacatcaacattgacctgaagcccaccgccgtgctgcggccctaccag
gagaagagcctgcgcaagatgtttggaaacggccgagcacgatcgggagtgatagtgctg
ccctgcggagccggtaaatctctggtgggtgtgaccgccgcgtgcaccgtgcgtaaacgc
tgcctggtgctgggtaactcctccgtctccgtggagcagtggaaggcccagttcaagatg
tggtccaccatcgacgactcccagatctgccgcttcacctccgacgccaaggacaaaccc
atcggctgctcagtggccatcagcacctactccatgttgggtcacaccaccaagcgatcc
tgggaggcagagaaggtcatggaatggatgcggacgcaggagtggggactcatgatcctg
gatgaggtccacaccatccctgcaaagatgtttcgacgtgtcctgaccatcgtccaggcc
cattgcaaactgggactcaccgccacactggtcagggaggacgacaagattgtggatctc
aacttccttattggtcctaagatgtatgaagccaactggatggagctgcagaacaacggt
tatatcgccaaagttcagtgtgcagaggtgtggtgcccgatgtccccggagttttacaga
gagtacgtggccattaagacaaagaagcgcattctgctgtacacgatgaaccccaataag
tttcgggcctgccagtttctcatccgcttccatgagcggcgcaacgacaagatcatcgtc
tttgctgacaacgtctttgccttgaaggaatacgccattcgcctcaacaagcctttcatc
tatggtcccacttctcaaggggagcgaatgcagattttacagaactttaaacacaatcca
aagatcaacaccattttcatctctaaggttggagacacttcttttgacttgccagaagcc
aatgttctgatccagatctcctcccatggtggctcacgcagacaggaggcacagagactt
ggcagagtcttaagagccaagaaaggaatggtggctgaggagtacaatgcgtacttttat
tctctggtgtctcaggacacccaggagatggcttattccacaaagaggcagagattcctt
gtggaccagggatacagcttcaaagtaattacaaagttagcaggtatggaggaagaggac
ctgatgttctccagcagagaggaacagcagcagctgctgcagaaggtgctcgctgcttca
gacctggatgctgaggaggaagtagtagcaggcgaagtgggagtacgaccacagttttcc
cggcgagtgggcaccatgagctccatgtcgggtgcagacgacacagtctacatggaatat
caaagcaggagcaacaaagcctctgcggggagcaagaacgttcacccactattcaagcgc
ttcagaaagtag
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