Gambusia affinis (western mosquitofish): 122846838
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Entry
122846838 CDS
T07758
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122846838 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122846838 (mtrex)
03041 Spliceosome [BR:
gaf03041
]
122846838 (mtrex)
03009 Ribosome biogenesis [BR:
gaf03009
]
122846838 (mtrex)
03016 Transfer RNA biogenesis [BR:
gaf03016
]
122846838 (mtrex)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122846838 (mtrex)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122846838 (mtrex)
Spliceosome [BR:
gaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122846838 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
122846838 (mtrex)
Ribosome biogenesis [BR:
gaf03009
]
Eukaryotic type
Pre-60S particles
Helicases
122846838 (mtrex)
Transfer RNA biogenesis [BR:
gaf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122846838 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
122846838
NCBI-ProteinID:
XP_043999982
LinkDB
All DBs
Position
LG17:9337681..9354068
Genome browser
AA seq
1035 aa
AA seq
DB search
MADPFGDGLFSVFDDEQGSAGRRTPTSASTETGKSAGKSGADRDAGPSALVKREADSDGG
EEVVFGKKPRHEAVSSSDLNLAEFMPQVKVEQVETVEGCSHEVALPADEEYKSLKPRVGK
AAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVIF
DEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDY
RPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGESGGSSGGAKWDRSRKG
GTKGPSSVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNNDDEKRLVEEVFNN
AVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIK
KLEEQYHTIEIPNEDSVITYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNED
TDFGWGVVVNFSKKANTKACGDSEPLYVVEVLLHCSKESAKNSATEAAKPAAPGETGEMQ
VVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKD
PGLKKVIQKVEAFEHRMYTHTLHSDPNLESVYSLCERKAQIAAEVRTAKRELKKARTVLQ
MDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQATA
LLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLM
DVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccttttggagatggattgttcagcgtgtttgacgatgaacaaggttctgct
ggcagaaggacgcccacgagtgcctctacagaaactggaaaatctgcaggtaaaagcggt
gctgacagggatgcaggtccgtctgctctggtcaagagggaggcggacagtgacggcgga
gaggaggtggtgtttgggaagaaacctcgtcatgaggcagtgtcatccagtgacctaaat
ctcgcagaatttatgcctcaagtgaaggtggagcaggtggaaaccgtggaaggatgctca
catgaggttgctctgccagctgatgaggagtataaatctctgaaaccaagagtgggaaaa
gcagctaaggaataccctttcgtactggatcccttccagcgtgaggctatcctatgtatc
gacaacaaccagtctgtgcttgtgtctgctcacacctctgcaggaaaaactgtctgtgca
gaatatgccatcgctctggctcttagagagaagcagagagtcatctttaccagtcccatt
aaagcactttctaaccagaagtacagagagatgtatgaagagttccaggatgtaggattg
atgactggcgatgttaccatcaaccctactgcctcctgccttgtcatgacaacagagatt
ctaagaagcatgctgtatcggggatctgagatcatgagggaggtagcctgggttatcttt
gatgagatccattacatgagagatgcagagcgtggtgtggtttgggaagaaactatcatc
cttcttcctgataatgtgcattatgtattcctgtctgctaccatcccgaatgccaaacag
tttgccgagtggatctgtcatttacacaagcagccttgccatgtggtttacacagactac
cggcccactccactgcaacattatatttttccagcagggggcgatggactccacctagtg
gttgatgagaacggggacttcagagaagataatttcaacacagccatgcaggttctcaga
gatgctggggaatccgggggcagcagtggaggcgccaagtgggatcgaagccgaaaggga
ggcactaaggggccatccagtgttttcaagatagtgaagatgatcatggagaggaacttc
cagccggtgatcattttcagcttcagtaagaaagactgtgaggcctacgccctgcaggtg
tccaagctggattttaacaatgatgatgagaaacgtctggttgaagaagtgttcaacaat
gcagtggactgtctttcagatgaggacaagaagctgcctcaggtcgagcatgtgctgcca
cttttaaagagagggataggaatccatcatggaggactgctgcccatcctgaaagagact
attgagattctcttctctgagggtctgctcaaggccctgtttgctacagagaccttcgct
atgggtattaacatgccagctcggaccgttctcttcaccagcgcacgcaagtttgacggc
aagaaccaccgctttataacatcaggtgagtacatccagatgtcggggcgtgctggcagg
agaggaatggatgacagaggaatagttatttttatggtggatgagaagatgagtccagct
gtgggcaaacagctactaaagggctcagcagatcctttgaacagtgccttccacctgacc
tacaacatggtgctcaacctgctgcgtgtagaagagatcaacccagagtacatgctggag
aaatccttctaccagtttcagcactacagggctttgcccggcgtcgttgagaaaattaag
aagttggaggagcagtatcacactattgagattcctaacgaggatagtgttattacatac
tttaagatcaggcagcagctggctaagctgggtaaagagatacaagaattcatccacaag
cccaaatactgcctgcccttccttcagcctggccgactcgtgaaggtgaaaaatgaggat
actgactttggctggggagtggttgtaaactttagcaagaaagcaaacacaaaggcctgt
ggagactctgagccgctgtacgtagtcgaggttttgcttcattgtagtaaagaaagtgca
aaaaattctgcaacggaagcggccaagcctgctgctccaggggagaccggagagatgcag
gtggttccagtgatgctccacctcctcacttcgatcagctcagttcgtctttacatccct
aaagatctcagaccttttgacaacaggcagctcatgctcaagtccatacaggaggtgcag
aagcggttcccggacggcgttcctttactcgaccccatcgacgatatgggcatcaaagac
cctggcctgaagaaggtcattcagaaggtggaggccttcgaacaccggatgtacacacac
acactccacagtgaccccaacttagaatccgtctactccctgtgtgagaggaaagcacag
atcgcagccgaggttcgaaccgccaaacgggagctgaagaaagctcgcaccgtcctgcag
atggacgagctgaagtgccgaaagcgagtcctccgaagactcggcttcgccagcccctct
gatgtcatcgagatgaaaggcagagtcgcctgtgaaatcagcagcgccgatgagctcctg
ctgacggagatggtgtttaatggcctcttcaacgacctgacggtggaacaagccaccgcc
ctcctgtcctgcttcgtcttccaggagaacgccaacgagatgccaaagctaaccgagcag
ctggccgcgccgctcagacaaatgcaggagtgtgcaaagcgcatcgccaaagtgtctgca
gacgccaagctggaagtcgatgaggagacttacctaaaccaattcaaacctcacttgatg
gatgtggtgttcgcctgggccaacggggccacgttcgctcagatctgcaagatgacggac
gtctttgaaggaagcatcattcgctgcatgcgccgcctggaggaggtgctgcgacagatg
tgctctgcagccaaagccatcggtaacactgaactggagaacaagtttgcagaaggcatc
acaaagattaagagagacatagttttcgctgccagtctctatttatag
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