Gambusia affinis (western mosquitofish): 122846852
Help
Entry
122846852 CDS
T07758
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122846852 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122846852 (nup54)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122846852 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
122846852
NCBI-ProteinID:
XP_044000008
LinkDB
All DBs
Position
LG17:9544063..9552296
Genome browser
AA seq
566 aa
AA seq
DB search
MAFSFGGAATNTGAGTSGFSFGQFGAKTTASTTFGFNPTATTTTASSGFGTLTAPAFGAA
TTTAAPATGFSFGASNTGTFGGFGTTTTTAAAPGSTFNFAPSNTAGSLFGNTQNKGFGFP
SGLGAGTTAGAMGFGTGLGTTGLGFGCFNIQPTQQQQGGLFGQLAQQQGQAQPNQLYQQV
TALSAPTLLGDERDSILAKWNQLQAYWGTGKGYYVNNNLPVDFTQENPFCRFKAVGYSCV
PVSKDEDGLVVLVLNKKEPDVRAQQQQLVESLHKVLGINQTLTVNVEGVKALPNDQTEVI
IYVVERSPNGTSKRIPASTLFTYVEQANIKAQLTQIGVVMSITRTELAPAQLKQLLQNAP
AGVDPIIWEQAKVDNPDPEKLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIISNDISEL
QKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSEL
NAPTQFKGRLNELMSQIRMQNHFGAVRSEERYNVDADLLREIKQHLKQQQEGLSHLISVI
KDDLEDIKLIEHGLSDGGHMRGGILS
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggtgccgcgactaacacaggggcagggacgtccgggttttca
tttggtcagtttggtgccaaaaccacagcttcaacaacgtttggttttaacccgacagcg
accactaccaccgcttcttcagggtttggcactctgactgctcctgcttttggcgcagcc
acgactacagcggcaccagccacaggattcagttttggtgcctccaacacaggtacgttt
ggtggctttgggacgactacaacaactgctgccgcaccaggatccactttcaactttgcc
ccctccaacacagcaggaagcttgtttggtaacacacagaacaaagggtttggattccca
tctggactcggagctggtaccactgctggagcgatgggctttggaactggattaggaaca
actggcctcggttttggatgttttaacatccagccgacacaacagcaacaaggaggcttg
tttggccagctggcccagcagcagggtcaagctcagccaaaccagctttaccagcaagtg
accgctctgtcagcccccactctcctgggagacgaacgcgactccatacttgccaagtgg
aaccagttgcaggcctactggggaacagggaagggctactatgttaacaacaacctacca
gtggacttcactcaagagaaccctttctgcaggttcaaggcagtggggtatagctgtgtc
ccagtaagcaaggacgaagatggtttagtagtgttggttctgaataaaaaggaacctgat
gttcgtgctcagcagcagcagctggttgagtcactgcacaaggttctgggaatcaaccag
actctgaccgtcaatgtagaaggtgttaaagctctgcccaacgatcagacagaggtgatc
atttatgtggtggagcgttcccccaatggcacctccaagaggatcccagcttccacactc
ttcacctacgtggagcaggccaacatcaaggctcagctcacccagattggagtggtcatg
tcaataacacgcacagagctggccccagcacagctgaaacagctgctgcaaaacgctcct
gcaggtgtggatcccatcatttgggaacaagctaaggtggacaaccctgacccagagaag
ttaatccctgtacccatggtgggtttcaaggagctgctccgcagattgcagatccaggag
cagatgaccaagcaacaccagaccagagtggatataatctccaatgacatcagtgagctg
cagaagaaccaggcaacaactgtagccaagatcgctcaatacaagaggaagctgatggat
ctgtctcacagggtgctgcaggtactaataaagcaggagattcagagaaaaagcggctac
gctatccaagtggatgaggagcatctgagggtgcagctggacaccattcagtcagaactc
aatgcacccacacagttcaagggtcgattgaatgagctgatgtctcaaattcgaatgcag
aaccactttggagccgtgagatcagaagagcgctacaacgtcgacgcagatctcctccga
gaaatcaaacaacacttaaagcagcaacaagaagggttaagtcacctgatcagcgtcatt
aaagatgacttggaggacatcaaactcatagaacatggcctaagcgacggcggccacatg
agagggggcattctgagctga
DBGET
integrated database retrieval system
