Gambusia affinis (western mosquitofish): 122846935
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Entry
122846935 CDS
T07758
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03320
PPAR signaling pathway
gaf04148
Efferocytosis
gaf04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122846935 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
122846935 (rxraa)
03320 PPAR signaling pathway
122846935 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122846935 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
gaf03310
]
122846935 (rxraa)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
122846935 (rxraa)
Nuclear receptors [BR:
gaf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
122846935 (rxraa)
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
122846935
NCBI-ProteinID:
XP_044000133
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Position
LG17:19488397..19661692
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AA seq
504 aa
AA seq
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METKPFLSLGFLKPQCSLAPPMQRGRSSEACSCFSGVCPLHQRRLSSDSSGQVTSSPLGS
PTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGLTSPFSVISSPMGPHSMNSPGMGY
GPSISPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTALSLTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKRE
VLLHAAVQEERQRAKDKNENEVESTSCVNEDMPVEKILEAEEAVEPKTETYIETNLGMPS
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI
AVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP
DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccgttcctgtcattggggtttttgaagccccagtgctcattggctccc
cccatgcaacgaggtcgttcgtctgaggcgtgttcatgtttcagcggtgtttgtcccctc
catcagcgtcgcctatcctcagattcttcaggacaggtgacctcctcacctttaggctct
cctacttcccatcgtggaatgcatccctctttgctgagccccacctccatgggaccctct
ggctctctccattctcccatcagcaccctgagttcaccaatgaacggcctcacctcgccc
ttctcagtcattagctcacccatggggccgcactccatgaactcacctggcatgggctac
ggccccagcatcagcccacagatgtttcagttgaactctccaatgaactcggtcagcagc
acagaggacattaagcccccgctgggcctcaatggcgtgatgaaggtgcccgctcagccc
tcaggcacggctctgtcactcaccaaacacatctgcgccatctgcggcgaccgctcctca
ggaaaacactatggtgtctacagttgtgaaggctgcaagggtttcttcaaacgaaccgtt
cgcaaggacttgacctacacctgccgtgacaacaaggactgtgttatcgataagcgccag
aggaaccgctgtcaatactgccgctaccagaagtgcttggccatgggcatgaagagagaa
gttttgttacatgcagccgtccaggaggagcgccagcgagccaaggacaagaacgagaac
gaggtggagtccaccagctgcgtgaacgaggacatgcccgtggagaagatcctggaggcc
gaggaggcggtggagcccaaaaccgagacctacatcgagaccaacctgggcatgccgtcc
aactcgcccaacgacccagtgacaaatatctgtcaggcagcagacaagcagctttttact
ctggtggagtgggccaagaggattccccacttctcggagctgccactggacgaccaggtc
atcctgctacgagcaggttggaatgaactcctcattgcatcattttcgcaccgttccatc
gcagtaaaggacgggattctgttggcgacggggctgcacgtgcatcgcaacagcgcccat
agtgccggagtgggagccatctttgacagggtgctcacagagctggtgtcaaagatgaga
gacatgcagatggataagactgagctgggctgcctccgagccatcgtccttttcaaccca
gactctaaaggtttgtccaacccaggtgaggtggaagctctgagagagaaagtctacgcg
tctttagaggcttactgcaaacaaaaatacccagagcagccaggcaggttcgctaagctg
ttgctgcggttaccagcgctgcgctccatcggactcaagtgtttggagcaccttttcttc
ttcaagctgattggcgacacacccattgacaccttcctcatggagatgctagaagctcct
catcaaatgacataa
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