Gambusia affinis (western mosquitofish): 122846968
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Entry
122846968 CDS
T07758
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122846968 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gaf04990
]
122846968 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
gaf04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
122846968 (pdlim5b)
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
122846968
NCBI-ProteinID:
XP_044000204
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Position
LG17:complement(13446938..13484369)
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AA seq
621 aa
AA seq
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MSSSYSVSLASPAPWGFRLQGGKDFCLPLTISRLTDGGKAVKAGMNIGDIILSINGISSE
GMNHLEAQNKIKACTGNLSLTLRRASAASKEESHKEEPQEIIKPVPITHPAPSTTYTKPP
SQPTPLYNKTARPFGGGSSGVTASSSLPAPKVASIPSESSAFTPASPSQPPQPPFALKSS
LPASDSAAVNSAPKISPGRSAFTSPSASSASSNSSSSPKVTAPPSHPNVPQPSVYNTPIN
LYSNVNACEVAIGQRRGLLESQGLSEHVNGTPPATTPRRKAGVELEKSVSPLSDASKKRL
IEDTEDWHPRTGTSQSRSFRILAQMTGTENEQMPENGKKEAVDPTGPSVHTSPAAKTYSN
SAAAPRNGSVVPGSAFKTPAQNKASFQPGGSSGFSKVGAGPSFGKIVSPAQKVLDRPTPQ
PHPEDLNSLVQRAEHIPAGTRTPMCCKCNKVIRGPFLVAMGMSWHPEEFNCAHCHSSLAE
RGFVEEKNQVYCVHCYEQFFAPTCASCNQKILGEVMNALKQTWHVSCFVCAACHQPIRGN
TFHMEDGQPYCERDYYTMFGTNCHGCDFPIEAGDKFLEALGFTWHDTCFVCVVCSTSLEC
QPFFSKKDKPLCKKHAHSVNI
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagtgtctccctggccagccctgccccctggggctttagactgcaa
ggagggaaggacttctgcctgcccctcaccatctcacggctgactgacgggggcaaggca
gttaaagccgggatgaacattggagatatcatcctttccattaatgggatttcctcggaa
ggcatgaatcacctggaggctcagaacaagattaaagcctgcacaggcaacctcagcctc
actctacgaagagcctccgctgcctcgaaagaggaatcgcacaaggaagaacctcaggaa
atcattaagcctgtgccgatcactcaccctgcgccgagcaccacatacaccaagccacca
agccagcccactcctttgtacaacaagacagctcggccgtttggaggcggtagcagtggg
gttactgcttcttcctccctgcctgctccaaaagttgcctctattccttccgaatcatca
gctttcaccccagcctctccctctcagcctccacagcctcccttcgcattgaagtcgagc
ctccccgcttcagattctgccgcagtaaactctgcccccaaaatcagccctggccgttct
gccttcacctccccctctgcctcatccgcttcatctaactcctcatcttcaccaaaagtg
acggcccccccttcccatcctaatgtcccgcagccctccgtctataatacacctatcaac
ctgtactccaacgtcaatgcttgtgaagttgctattggacaaaggcgaggccttttggag
agccagggtctctcagaacatgtaaatggaactccacctgcaactacacctaggaggaaa
gctggtgtggagcttgaaaagagcgtgtcccctctgagtgacgccagcaaaaagcgtctt
attgaagacacagaggactggcacccacggactggtacctcccagtctcgctccttccgc
atcctcgcacaaatgactggcactgagaatgaacaaatgccagaaaatgggaaaaaagaa
gcagttgacccaaccggtcccagtgttcacacatcacctgctgcaaaaacatattccaat
tctgcagcagcacccaggaatggcagtgtagtccctggatctgcatttaagactcctgct
caaaataaagcctccttccaacctggaggttcttcagggttttctaaagtgggagcaggt
ccctcatttgggaaaatagtcagtcctgctcagaaagtactggaccgccccactccacag
ccacatcctgaggatctgaactctttggtgcaacgtgctgagcatatacctgctggtacc
cgcaccccaatgtgctgcaagtgcaacaaagtcataagaggcccattcctcgtggccatg
ggcatgtcctggcaccctgaggaattcaactgcgctcactgccactcctccctggcagaa
cggggatttgttgaagagaagaaccaggtgtactgtgtgcattgctacgagcagttcttt
gctcccacctgtgccagctgcaaccagaagatcctcggggaagtcatgaatgccctgaag
cagacctggcatgtgtcctgttttgtctgcgctgcctgccaccagccaatcagaggcaac
acatttcacatggaggacggacagccatactgtgaaagagactattacaccatgtttggg
accaactgccatggctgcgacttccccattgaggccggagacaagttcctggaggcgctg
ggttttacctggcatgacacctgttttgtgtgtgtggtttgctccaccagcctggaatgc
caacctttcttctccaagaaggacaagcctttgtgcaagaaacatgctcactctgtcaac
atctga
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