Gambusia affinis (western mosquitofish): 122847281
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Entry
122847281 CDS
T07758
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122847281 (rc3h2)
04121 Ubiquitin system [BR:
gaf04121
]
122847281 (rc3h2)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122847281 (rc3h2)
Ubiquitin system [BR:
gaf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122847281 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
Prok-RING_4
zf-CCCH_4
zf_CCCH_4
zf-C3HC4_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
122847281
NCBI-ProteinID:
XP_044000802
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All DBs
Position
LG17:15284947..15314248
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AA seq
1117 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLKLVGAQVPDVPPVSLSSAADVEHYDLCRLCVEELALYLKPISGAKGVAN
LSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHLELLANI
DHNPDVPPPSWAELESVMLAVKLVVHGLVEFIQNFSKKSHETPQPQANSKYKTSMCRDLR
QQGGCPRGTSCTFAHTQDELEKFRLRNKKSSSVVRPFSLASKGLKDADENMEEASSLTNP
LLISRGSGGVEELKRALTNGTSGANGPNRTKSGSTELKPMSPPRTPVSHSSASSPLSSAG
GADVSAPLPRHGQFIISSPHPSQASELYYQESHPGYDTVHFQPNSGSYYPSALHPPHKSC
MARFLRSSNVQESSLPPSSGVSSYPKDPQAPHPVSSPSSGFPPRDQMGAPTFHPHPGQGQ
YRPLAPVHGVYAPLYDSRRVWRPQLYHREDARSNSLPPEVLHSSVYQPPLRERFNSLDSN
YCSGAEHRTGLHRDYGRVPLGYEDLFRQKQEHWTHIHHHHNPNRPSQSSPIFTTDFGAEH
VESSGGQCVGCRFRGEESLARYSPWSCSSAGPSLSPFEPEPLKHTPAHSHSHSEHLELDC
IEGGQGGVSGTGKRCLHLLDHYRRLKEEDPIIPFSEAPIISKWGAISRASRTGYHTTDPV
QATACQGSASTTAINFKDYNHHFDHGDYRWSSRGSDSSSHSSFLESEHLCATELNDHRTS
ISSGEKIGLDHLQAHQTTFQRDQNRTESESDPDRDIELELRVLDMEDSEHHEIQSQECLD
LSSPESQDASHLLPPPCSSPLCSSPVEEHTQSESLLTEKMDPLQLKKMAFRKSLSPIGLG
SGSLGIRKLVLRARPPQLHDSSTRTHPETPGKEMLLN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcggcccagtggacagagtttctgtcctgtcccatctgctacaatgag
tttgacagcagcggccaccagcccatcagcttgggctgctcccacacggtgtgcaaaacg
tgcctgcacaaactgcaccgcaaggcctgccccttcgatcagacgcccatcagcacggac
atcgacctgctgccggtcaactgcgccctgctgaagctggtcggagcacaggtcccagat
gttcctcctgtgagtctgagcagtgcggcagatgttgagcactatgacctttgccgactg
tgtgtagaagagctggctctctacctgaaacctatcagtggtgccaaaggtgtggcgaac
ctgagtccgagcgtgctcagtaggcccatgcagagaaagctggttactctggtgaactgc
cagctggtagaagaggagggtcgtgtgcgggcggtccgggcagcccgctcactgggggaa
cggactgtaaccgaactcatcctgcagcaccagaacccccagcagctctctgctaacctc
tgggcagcggtgagggcgcggggctgccagtttttgggtcctgcaatgcaagaagatgca
ctgaagctggttttactagctttggaggatggttctgctctgtctaggaaggtgctggtt
ttgtttgtggtccagaagcttgaggcccggttcccccaggcatctaaaaccagcataggc
catgtggtgcagctgctgtacagggcctcctgctttaaggtgactaagcgggatgaggat
tcctccctaatgcagctgaaggaggagtttcgaacgtatgaggcgctaagaagagaacat
gacgctcagattgtccacattgccatggaggcaggccttcgaatttctcctgagcagtgg
tcctctctcttatatggagacctagtccacaaatcacacatgcagtccataattgacaag
ttgcagtctccagagtcatttgcaaagagcgttcaggaactgacgattgttctgcagagg
acgggagatccagccaacctcacaagccttagaccacacctagagctactggccaacata
gaccacaacccagatgtcccgccaccgtcctgggcagagctggaaagcgtgatgctggct
gtaaagctggtggttcatggactggtggagttcatacagaacttcagcaagaagagccat
gaaactccacagccccaggccaacagcaagtataagaccagcatgtgcagagatcttcgt
cagcagggaggctgtcccagaggaaccagctgtacatttgcgcacacgcaagatgagctg
gagaaattcagactgaggaacaagaagagcagcagcgtggtccggccattctctttagcc
agcaaaggcctcaaagatgcagatgaaaacatggaggaagcttccagcctgacaaacccg
ctgctgatctccagagggtcagggggtgtggaagaactgaaaagagctttgacgaatgga
accagtggggctaacgggcctaacagaaccaaatcagggtccacagagctgaagcccatg
tcccctcccaggactccagtcagccactcttcagcttcctctcctttgagttctgcaggt
ggtgctgatgtcagcgctcctcttcctcgacatggtcagttcatcatctcctctcctcac
ccttctcaggcatcagagctatactaccaggaatctcaccctggttatgacacggtgcac
tttcagccaaactcaggttcttactatccatctgctcttcaccctcctcataaatcctgc
atggctcgcttcctgcggtcctccaatgtccaggaatcctcgctgccgccttcttctggt
gtttcctcttaccccaaggacccccaggctcctcacccagtctcgtccccttcatcaggg
tttccccctagagaccagatgggagcccccaccttccatccccatccaggacagggtcaa
tacagacctttggctcctgttcatggtgtttatgctcctctttatgacagcaggagagta
tggaggcctcagctgtaccacagagaggatgccaggagtaactcactgcctccagaggtt
cttcactcctctgtctaccagcctccactcagagagcgattcaactctctagacagtaac
tactgctctggagcggagcaccgtactgggctgcacagggactatggacgggttcctctg
ggatatgaggatttatttagacagaagcaggaacactggactcacatccaccaccatcac
aatcccaacaggccctcccagtcttcccccatattcaccactgattttggagcagagcat
gtagaaagcagtggaggtcagtgtgtgggatgtaggttcaggggcgaggaaagtttggcc
cgttactctccgtggtcctgcagttctgcagggcccagccttagcccctttgagcctgaa
cctctcaaacacaccccagctcactcccattcccactcggagcatctggaactagactgt
attgaaggaggccaaggtggtgtaagcggaacaggaaaacgatgtctgcacttgttggat
cactaccgacgtttgaaagaggaagatccaattattcccttcagtgaggcgcccatcatc
tcaaagtggggtgccatttctagggcatcacgcacaggctatcataccactgaccccgtc
caagctacggcctgccaaggcagcgccagcaccacagcaataaacttcaaagattacaac
caccactttgatcatggcgactataggtggagctccagaggatcagactcctctagccac
tccagtttcctcgagagtgagcatctttgtgcaacggagctgaatgaccatcgaacttca
ataagcagtggagagaaaattgggttggaccacctgcaagcccaccagacaaccttccaa
cgggatcaaaaccgaacagaaagcgaatctgacccagatcgagacattgagcttgaactg
cgagtgcttgacatggaggattcagagcaccatgagatccagtctcaggagtgcttagat
ctgtccagccccgagtctcaggatgcttcccacctcctcccacctccctgctcatctcct
ctgtgctcctcccctgtagaggagcacacccagtcagaaagtctactgacagagaaaatg
gatccactccagctaaaaaagatggcctttaggaaatctctgtcccctataggtctggga
tcaggaagtctgggcatcaggaagctggtgttacgagccagacctccacaactacacgac
tcctccaccaggactcatcctgagacgcctgggaaggagatgctgctcaattga
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