Glaciecola sp. 4H-3-7+YE-5: Glaag_0164
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Entry
Glaag_0164 CDS
T01483
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Pathway
gag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Glaag_0164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gag03019
]
Glaag_0164
03400 DNA repair and recombination proteins [BR:
gag03400
]
Glaag_0164
Enzymes [BR:
gag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Glaag_0164
Messenger RNA biogenesis [BR:
gag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Glaag_0164
DNA repair and recombination proteins [BR:
gag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Glaag_0164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AEE21133
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All DBs
Position
complement(189794..191593)
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AA seq
599 aa
AA seq
DB search
MPSTDINAAQNVLKNVFGYDAFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVL
EGLTIVISPLIALMKDQVDALVASGVSAAYINSNLSNEEMLNVYRGMQDGRYKLIYVAPE
RLMQFDFIQRLHSLNVALFAVDEAHCVSHWGHDFRKEYRQLGQIKQQFPGVPVVGLTATA
DITTRSDILQQLALEQPFVFKGSFDRPNIRYNQLFKYKATDQVIQYVKQQDGSGIIYCNS
RKKVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATVAFGMGINKSNV
RFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGMGDNPARLDIEL
QKFAAMEAFAEAQTCRRQVLLNYFSEYSAEDCGNCDICLDPPKRFDGKVSAQMVLSCIYR
LGQNVASQYVIDVLRGKKLKRIFEQGHDALSTFGIGKDKSDAHWHNIIYQLIHKGFLRID
ITQSAVLKLTEEARGLLAGKLELALAVPRLTIDSGKKSKLKEMNYDRKLFAKLKHLRKSI
AQREDVPPFVVFSDATLADMADKLPQSKVEFLEVNGVGQTKLDRYGSEFLAAIAAYSLS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgccaagtactgatataaatgccgcgcaaaatgtacttaaaaacgtattcggctacgac
gcgtttcgtgacggtcagcgcgaagtgatcgagcaaatattgcagggaaaagatgtactg
gttcttatgcccactggtggcggaaaatccttgtgttaccaaatacccgcactagtgctc
gaggggctaaccatcgttatctcgccgcttattgcactgatgaaagaccaagtcgacgcc
cttgttgcctcaggtgtaagcgccgcttatatcaattcaaatttaagcaatgaagagatg
cttaacgtttaccgtggtatgcaagatgggcgctataaactgatttatgtcgcacctgaa
agactcatgcaatttgatttcattcagcggcttcacagtttaaacgtggcgctgtttgcg
gtcgatgaagctcactgcgtctcccattggggacatgactttcgcaaagaataccgccag
cttggtcaaataaaacagcaatttcctggggttcctgtggttgggctgacggccacggct
gatatcacaacgcgcagtgacatattgcaacagctcgctttagagcagccttttgttttt
aaaggcagcttcgatagaccgaatattcgttacaaccagctattcaaatacaaagccacg
gatcaggtcattcaatatgtaaaacaacaagacggcagcggtattatttattgtaacagt
cgcaagaaagttgacgacttgagcattgccctcgcaagacaaggcattaattgcgcgggt
tatcacgcaggtcttgagggtcctatacgcgacaagatacagcgcgactttattcaagat
aacgtagatatcatcgttgccaccgttgcctttggcatggggatcaataaatcaaatgtg
cgctttgtcgtgcattttgatttacctcgcagtgttgaagcctattatcaagaaacaggc
cgtgcggggcgtgatggtatgcctgctgaagcgctactgttatttgacgaaaaagacgca
gcccgcattcgtcaatggattggtatgggagataacccagcgcgtcttgacatcgaacta
caaaagtttgccgccatggaagccttcgcagaagcgcaaacctgtcgccgccaagtgtta
ctcaactacttttctgagtattccgctgaagactgcggaaactgtgatatttgcttagac
ccacctaaacgttttgatggcaaagtctcggcgcaaatggtcttgtcgtgtatttaccgt
ttgggtcaaaatgtggccagccagtatgttatcgacgtgctacggggtaaaaaattgaaa
cgtattttcgagcaaggacatgacgctcttagcactttcggcatagggaaagataaatcg
gatgcccactggcacaacattatttatcagctgatacacaaaggttttttacgcatcgac
atcacccaaagcgctgttttaaaattaacagaagaagctcgtggccttctggctggtaaa
ttagaacttgctttagcagtacctagattaaccatcgattcaggtaaaaagtctaaactg
aaagagatgaactatgaccgtaaactattcgctaaattaaaacacttgcgtaagtccatt
gcacaacgcgaggacgtaccgccgtttgtggtatttagtgatgcgacccttgccgatatg
gctgataaactgccccaatcaaaagtggagtttttggaggtcaacggcgtaggccaaacc
aagcttgaccgttacgggagtgaatttttagcggcgatagccgcttattcactgtcctaa
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