Glaciecola sp. 4H-3-7+YE-5: Glaag_0645
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Entry
Glaag_0645 CDS
T01483
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Pathway
gag02020
Two-component system
gag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Glaag_0645
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Glaag_0645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gag03021
]
Glaag_0645
Transcription machinery [BR:
gag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Glaag_0645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AEE21608
LinkDB
All DBs
Position
732794..734287
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AA seq
497 aa
AA seq
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MKPSLQLKFSQSLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEIEEPVDQESGDS
ALNDKSLDPSSKDSNEIVDTSSDTLDSSEAFEKNEIPEDLPTDTTWDEYISASSAPASSI
SNGAGGDDEQIFQGETTDDIQEHLLWQMRLTHFSDTDVAIATAIIDSIDESGYLTMSVED
VLASMDDEEIELDEVECVLKRIQMFDPVGSGSRSPQECLLVQLRQFAPDTPWLEEAKTLI
SEYADLLSSKDYRTLMRKSRLKEDDLREVMRLLKTLNPRPGSALIKGEPEYVIPDVSVSK
KNGRWTVELNPDSLPKLNVNQQYAAMSRSAKNTSDSQFIRSHMQEAKWFIKSVESRNDTL
LKVSNCIVQQQMGFFEHGPEMMKPMVLNDVAEMVDMHESTISRVTTQKYMHTPRGIFELK
YFFSSHVATETGGECSSTAIRALIKKLVAAEKPSKPLSDSKIAQLLAEQGIMVARRTIAK
YRESLMIPPSNQRKSLL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctctttacaattaaaatttagtcaatcacttactatgacgccacaattgcag
caagcgatacgcttactgcaattgtctacgttagatttacaacaagagattcaagaggcc
ttggattcgaatccgctattggaaattgaagagccggtagatcaagaatctggcgatagc
gcattaaatgataaatctctcgacccttcctctaaagatagtaatgagatagttgacaca
agcagcgacacattagactcaagtgaagcatttgagaaaaacgaaattcctgaagattta
cccacagacactacatgggatgagtacattagtgcttcttcggcacctgcctcgagcatc
tctaatggtgcaggcggtgatgatgaacagattttccagggtgaaaccacagacgatatt
caagagcatttgttatggcaaatgcgtttgacccactttagtgataccgatgtggccatc
gcgaccgccatcattgactcaattgatgagtcaggttatttgaccatgagcgttgaagat
gtgctggccagcatggatgatgaagaaatagagttggatgaagtcgaatgcgtgcttaaa
cggattcaaatgttcgatcccgtgggttctggttctcgttcaccacaagagtgcttattg
gttcaattgcgtcaatttgccccagataccccttggcttgaagaagcgaaaaccttaatt
agcgaatacgcagatttattgagcagcaaggactatcgtaccttaatgcgtaagtcacgc
cttaaggaagatgacctacgtgaggttatgcgcttacttaaaacactcaatccacgtcct
ggcagcgctttaattaaaggtgagccagaatacgtgatacctgatgtgtcagtcagcaaa
aagaacggccgctggacggttgagcttaatcccgatagtttgcctaagttgaacgtgaat
cagcaatatgctgccatgagccgcagtgctaagaatactagcgacagtcaatttattcgt
tctcacatgcaagaagccaaatggtttataaaaagtgtagagagccgcaacgatacgtta
ttgaaagtgtcaaattgcatagtgcaacagcaaatgggcttttttgaacacggcccagaa
atgatgaagcctatggtgttgaatgatgttgctgaaatggtcgatatgcatgaatccacc
atttcacgtgttaccacgcaaaagtatatgcataccccaagagggatatttgagctgaag
tatttcttctctagccatgttgctactgaaacaggcggagaatgttcttcaacagcaata
cgtgcgttgattaaaaagctggtcgcggctgaaaaacccagtaagccgttaagtgacagc
aagattgctcaattgttggctgagcaaggcattatggttgctaggcgaacaatagcaaag
taccgggaatctctgatgatacccccgtcgaaccaacgaaaaagcctattgtag
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