KEGG   Glaciecola sp. 4H-3-7+YE-5: Glaag_1820
Entry
Glaag_1820        CDS       T01483                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
gag  Glaciecola sp. 4H-3-7+YE-5
Pathway
gag03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Glaag_1820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gag03400]
    Glaag_1820
DNA repair and recombination proteins [BR:gag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Glaag_1820
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Glaag_1820
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind AAA_21 nSTAND1 DnaJ_CXXCXGXG AAA_29 AAA_16 AAA_25 AAA_22 SLFN-g3_helicase MeaB Viral_helicase1
Other DBs
NCBI-ProteinID: AEE22768
LinkDB
Position
2123879..2126347
AA seq 822 aa
MRGARVHNLKNVNVDLPRNALVVFTGISGSGKSSLAFGTLFAESQRRYLDSVSPYARRLI
DQVEEPDVDAIEGLPPAVALQQQRGTPSVRSSVGSVTTISNALRMLYSRAGEYPDGQSIL
YADSFSPNTAQGACPKCHGIGRVFDVTEKLLVPDDSKTIREKAIAAWPPAWQGANLSRIL
VSLGYDIDVPWRDLPKKAREWILFTDETPTVPVFPEYNVAQTKAAIKNGEAPSYMGTFTS
AQRFVLQSFATTQSVRTKKRVSQFMQISQCPECEGKKLKRESLSVTFTGLDIGQLSQLTL
TQLAQRLRKIASTKASDELHDREKAIVAQRLASDILARVEALTYLGLGYLSLERSTTTLS
PGELQRLRLATQIRSQLFGVVYVLDEPSAGLHPADKKALLGSLDQLVTAGNSVFMVEHDV
SVIRHADWIVDVGPDAGTHGGEIIYNGPVEGLIGNQRSHTAKHLFEGVTANERTPRQAKS
WLKLVGVKRNNVQNLDVTFPLGVITTVTGVSGSGKSSLVSQALVELVNEGLGVKKTLDVP
TDEAELLEQEAETPTGGHIADGLANVKRLITVDQKPIGRTPRSNLATYTGLFDYVRKLFA
GTDESKKRRYDAGRFSFNVTKGRCANCDGVGFVSVELLFLPSVYSPCPECQGQRYNDKTL
EITYRGKNIADVLELTVETAHTFFVDEPPVLRALDALIQVGLGYLRLGQPATELSGGEAQ
RIKLATELQRVQRGDTLYVLDEPTTGLHPKDVAMLMSQLNGLVDAGNTVIMVEHDMKVAS
TSDWVIDIGPEAGDKGGKVVAQGTPKQVAANKKSRTAPFLLV
NT seq 2469 nt   +upstreamnt  +downstreamnt
gtgcgcggcgcccgtgtccacaatctaaaaaacgtgaatgtggatttaccgcgcaatgca
ttagtcgtgtttaccggtatttcaggctcaggtaaatcgtctttggcctttggtacttta
tttgctgagtctcagcgacgctatcttgattcggtgtcaccttatgcgcgtcgcttaatt
gatcaggtggaagagcctgatgttgacgctattgaggggttaccgccggcggtcgctttg
cagcagcaaagaggcacgccttcggtacgttcatccgttggcagtgttaccaccatttca
aatgcactacgcatgctctattcccgtgcgggagagtaccctgatggtcaatcaatactc
tatgctgattcgttttcacccaacacagcgcagggggcatgtccaaaatgccacggtatt
ggtcgtgtttttgatgttactgaaaagctattggtacctgatgacagtaaaaccatcaga
gaaaaggcgatagccgcgtggccgcctgcatggcaaggcgcaaatttaagccgaattctg
gtctctcttggttacgacatcgatgttccgtggcgtgacttaccgaagaaagcgagggag
tggattttattcactgatgaaacccccacagtaccagtctttcctgaatataatgtagcc
caaaccaaagcggcaattaaaaacggcgaagcacctagctatatgggcacgtttaccagc
gcccagcgttttgttttacagtcttttgccactacgcaaagtgtgcgcactaaaaaacgc
gtatcgcaatttatgcaaatttcacagtgcccagagtgtgagggaaaaaagctaaaacgt
gagtcgctatccgtgacctttaccgggttagacatcggccagttatcgcaattaacactg
acacaacttgcgcaaagattacgtaagatcgcgagtaccaaagccagtgatgaattacac
gatcgcgaaaaagccattgtggcgcagcgtttagccagcgatattttagccagagttgaa
gcattaacgtatttgggccttgggtacttgtcgcttgaacgcagcaccaccacgctttcg
cctggcgagttacagcgtttgcgcttggctacgcaaattcgctcgcagttgtttggtgtg
gtttacgtactggatgaaccatcggctgggttgcatcctgctgataaaaaagccttgtta
ggatcgctagatcagctagtgacggcgggaaactctgttttcatggtcgagcatgatgtg
agtgttattcgccatgcagattggatagtcgatgtagggccagacgctggcacccacggc
ggtgagattatctacaatggccctgttgaaggactaataggtaatcagcgttcacacacc
gcaaaacatttatttgagggagtcaccgcgaatgagcgcacgcctcgtcaagcgaaatca
tggctaaaactcgttggtgtaaagcgtaataatgtacaaaatttggatgtgacgtttccg
cttggggttattacaaccgtaacgggggtttctgggtcaggtaagtcgagtttggtgagc
caagcgctagttgaattggtcaacgagggattgggggtaaagaagaccctcgatgtgcca
actgatgaagctgaattgcttgagcaagaagccgagacacctacaggtggtcacattgct
gatggtttggctaatgtgaagcgcttgatcacggtggatcaaaaacccattggcagaacg
ccgcgctcgaatctagcgacctacactggtttattcgactatgttcgtaagttatttgct
ggcactgatgagtcgaaaaagcgacgttacgatgctggtcgcttttcgtttaacgtcacc
aaaggccgctgcgccaattgcgacggagtagggtttgtcagtgtcgagttactctttctg
ccgagcgtttattcgccttgcccagaatgccaaggccagcgctacaacgacaaaacctta
gaaattacctatcgaggcaaaaacattgctgatgtactggaattaacggtagaaactgct
cacacctttttcgttgacgagccacctgtgctgcgagcattagatgccttaatacaagta
ggccttggctacttgcgacttggccaaccggcgacagaactttctggcggtgaagcgcag
cgtattaaattagccactgaactacagcgagtgcaaagaggtgacacgctgtatgtgtta
gatgagcctaccaccggtttgcacccaaaagacgtggccatgctgatgtcgcaactaaat
gggctggtggacgcggggaatacggtgatcatggttgaacacgacatgaaagtcgcaagc
accagtgattgggtaatcgacattggcccagaagctggtgacaagggcggcaaagtcgtc
gcacaaggcacgccaaaacaggtcgcagctaataaaaaaagtcgtacggcacccttctta
ctggtgtaa

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