Glaciecola sp. 4H-3-7+YE-5: Glaag_1820
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Entry
Glaag_1820 CDS
T01483
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Pathway
gag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Glaag_1820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gag03400
]
Glaag_1820
DNA repair and recombination proteins [BR:
gag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Glaag_1820
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Glaag_1820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_29
AAA_16
AAA_25
AAA_22
SLFN-g3_helicase
MeaB
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AEE22768
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Position
2123879..2126347
Genome browser
AA seq
822 aa
AA seq
DB search
MRGARVHNLKNVNVDLPRNALVVFTGISGSGKSSLAFGTLFAESQRRYLDSVSPYARRLI
DQVEEPDVDAIEGLPPAVALQQQRGTPSVRSSVGSVTTISNALRMLYSRAGEYPDGQSIL
YADSFSPNTAQGACPKCHGIGRVFDVTEKLLVPDDSKTIREKAIAAWPPAWQGANLSRIL
VSLGYDIDVPWRDLPKKAREWILFTDETPTVPVFPEYNVAQTKAAIKNGEAPSYMGTFTS
AQRFVLQSFATTQSVRTKKRVSQFMQISQCPECEGKKLKRESLSVTFTGLDIGQLSQLTL
TQLAQRLRKIASTKASDELHDREKAIVAQRLASDILARVEALTYLGLGYLSLERSTTTLS
PGELQRLRLATQIRSQLFGVVYVLDEPSAGLHPADKKALLGSLDQLVTAGNSVFMVEHDV
SVIRHADWIVDVGPDAGTHGGEIIYNGPVEGLIGNQRSHTAKHLFEGVTANERTPRQAKS
WLKLVGVKRNNVQNLDVTFPLGVITTVTGVSGSGKSSLVSQALVELVNEGLGVKKTLDVP
TDEAELLEQEAETPTGGHIADGLANVKRLITVDQKPIGRTPRSNLATYTGLFDYVRKLFA
GTDESKKRRYDAGRFSFNVTKGRCANCDGVGFVSVELLFLPSVYSPCPECQGQRYNDKTL
EITYRGKNIADVLELTVETAHTFFVDEPPVLRALDALIQVGLGYLRLGQPATELSGGEAQ
RIKLATELQRVQRGDTLYVLDEPTTGLHPKDVAMLMSQLNGLVDAGNTVIMVEHDMKVAS
TSDWVIDIGPEAGDKGGKVVAQGTPKQVAANKKSRTAPFLLV
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcggcgcccgtgtccacaatctaaaaaacgtgaatgtggatttaccgcgcaatgca
ttagtcgtgtttaccggtatttcaggctcaggtaaatcgtctttggcctttggtacttta
tttgctgagtctcagcgacgctatcttgattcggtgtcaccttatgcgcgtcgcttaatt
gatcaggtggaagagcctgatgttgacgctattgaggggttaccgccggcggtcgctttg
cagcagcaaagaggcacgccttcggtacgttcatccgttggcagtgttaccaccatttca
aatgcactacgcatgctctattcccgtgcgggagagtaccctgatggtcaatcaatactc
tatgctgattcgttttcacccaacacagcgcagggggcatgtccaaaatgccacggtatt
ggtcgtgtttttgatgttactgaaaagctattggtacctgatgacagtaaaaccatcaga
gaaaaggcgatagccgcgtggccgcctgcatggcaaggcgcaaatttaagccgaattctg
gtctctcttggttacgacatcgatgttccgtggcgtgacttaccgaagaaagcgagggag
tggattttattcactgatgaaacccccacagtaccagtctttcctgaatataatgtagcc
caaaccaaagcggcaattaaaaacggcgaagcacctagctatatgggcacgtttaccagc
gcccagcgttttgttttacagtcttttgccactacgcaaagtgtgcgcactaaaaaacgc
gtatcgcaatttatgcaaatttcacagtgcccagagtgtgagggaaaaaagctaaaacgt
gagtcgctatccgtgacctttaccgggttagacatcggccagttatcgcaattaacactg
acacaacttgcgcaaagattacgtaagatcgcgagtaccaaagccagtgatgaattacac
gatcgcgaaaaagccattgtggcgcagcgtttagccagcgatattttagccagagttgaa
gcattaacgtatttgggccttgggtacttgtcgcttgaacgcagcaccaccacgctttcg
cctggcgagttacagcgtttgcgcttggctacgcaaattcgctcgcagttgtttggtgtg
gtttacgtactggatgaaccatcggctgggttgcatcctgctgataaaaaagccttgtta
ggatcgctagatcagctagtgacggcgggaaactctgttttcatggtcgagcatgatgtg
agtgttattcgccatgcagattggatagtcgatgtagggccagacgctggcacccacggc
ggtgagattatctacaatggccctgttgaaggactaataggtaatcagcgttcacacacc
gcaaaacatttatttgagggagtcaccgcgaatgagcgcacgcctcgtcaagcgaaatca
tggctaaaactcgttggtgtaaagcgtaataatgtacaaaatttggatgtgacgtttccg
cttggggttattacaaccgtaacgggggtttctgggtcaggtaagtcgagtttggtgagc
caagcgctagttgaattggtcaacgagggattgggggtaaagaagaccctcgatgtgcca
actgatgaagctgaattgcttgagcaagaagccgagacacctacaggtggtcacattgct
gatggtttggctaatgtgaagcgcttgatcacggtggatcaaaaacccattggcagaacg
ccgcgctcgaatctagcgacctacactggtttattcgactatgttcgtaagttatttgct
ggcactgatgagtcgaaaaagcgacgttacgatgctggtcgcttttcgtttaacgtcacc
aaaggccgctgcgccaattgcgacggagtagggtttgtcagtgtcgagttactctttctg
ccgagcgtttattcgccttgcccagaatgccaaggccagcgctacaacgacaaaacctta
gaaattacctatcgaggcaaaaacattgctgatgtactggaattaacggtagaaactgct
cacacctttttcgttgacgagccacctgtgctgcgagcattagatgccttaatacaagta
ggccttggctacttgcgacttggccaaccggcgacagaactttctggcggtgaagcgcag
cgtattaaattagccactgaactacagcgagtgcaaagaggtgacacgctgtatgtgtta
gatgagcctaccaccggtttgcacccaaaagacgtggccatgctgatgtcgcaactaaat
gggctggtggacgcggggaatacggtgatcatggttgaacacgacatgaaagtcgcaagc
accagtgattgggtaatcgacattggcccagaagctggtgacaagggcggcaaagtcgtc
gcacaaggcacgccaaaacaggtcgcagctaataaaaaaagtcgtacggcacccttctta
ctggtgtaa
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