Glaciecola sp. 4H-3-7+YE-5: Glaag_2010
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Entry
Glaag_2010 CDS
T01483
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gag03032
]
Glaag_2010
03400 DNA repair and recombination proteins [BR:
gag03400
]
Glaag_2010
Enzymes [BR:
gag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Glaag_2010
DNA replication proteins [BR:
gag03032
]
Prokaryotic type
DNA Topoisomerases
Glaag_2010
DNA repair and recombination proteins [BR:
gag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Glaag_2010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Toprim_2
DUF7351
Motif
Other DBs
NCBI-ProteinID:
AEE22955
LinkDB
All DBs
Position
2345752..2348391
Genome browser
AA seq
879 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTKALGKVPPKKPAKELKLLSEN
KRESYLREHEYRKLVDRMGVDPKDDWAAHYEVLNGKEKVVNELKKLAKNADTIYLATDLD
REGEAIAWHLQELIGDPSKDYQRVVFNEITKNAIQEAFSEPGKVNVERVNAQQARRFLDR
IVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWDVHANLLTAKDSD
LRMQVAKYNDKAFKPTNKKQTDTALADLEGAEYKVISRDSKPTQSRPSAPFITSTLQQAA
STRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSKEAVDACRDYIDDNFGAKYLPENAL
KYGSKEGAQEAHEAIRPSNVLLKSESLSEMERDAQRLYELIWRQFVACQMTPAKYDASTI
RVSANGYELTAKGRVLKFDGWTKVQNPQRKKGEEDFLLPDVKEGESLSLKQLDPKQHFTK
PVARFNEASLVKELEKRGIGRPSTYASIISTIQDRGYVRLESKRFYAEKMGEIVNDRLLE
NFDNLLSFDFTAKMEQELDEIANGKVSWKDVLNDFYGDFEKKLHLAEKDPDDGGMRLNQA
VPTDIECPKCGRPMNVRTASTGVFLGCSGYNLPPKERCTGTMNLTSGDEVIKVDDEEELE
TELLRSKRRCPICSTAMDSYLVDETRKLHVCGNTPTCPGIEVEMGTFKIKGYDGPIIECD
KCGSDMELKNGRFGKYFGCTNEECKNTRKLLRNGEAAPPKEDPVDLPELECTKSDAHFVL
RDGASGIFMAAHNFPKSRETRAPLVAELARFRDRISPKFYYLADAPAKDPDGNDTLVRYS
RKTKQQYVMSENEEGKATGWSAWYTDNKWTVEDKRKKAK
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagtctctggtcattgtcgaatcaccggcaaaggcgaaaacaattaataaatat
ctcgggaaagattttattgttaaatctagtgtaggccacgttcgagaccttccaaccaaa
gcgttaggcaaagttccgcctaaaaaaccagcaaaagagctgaagttattatccgaaaat
aagcgtgaatcttatttacgtgaacatgaatatcgtaaattagtcgaccgtatgggagtc
gatccaaaagacgattgggcagcccattacgaagtattaaacggcaaagaaaaagtcgtt
aacgaacttaaaaagttagcaaaaaatgctgacactatctatctcgcgacggatttggat
agagaaggagaagccatcgcatggcatctacaagaattgattggcgatcctagcaaggat
tatcaacgcgtggtgtttaacgaaatcaccaaaaacgccattcaagaagccttctctgaa
cccggaaaagtcaatgtcgagcgcgttaatgcccaacaggcacgtcgcttccttgaccga
attgttggttttatggtgtcgccgcttttatggaaaaaggtcgcccgaggattatcagct
ggccgtgttcaatcggttgcggtacgccttgtggtcgagcgtgagcgtgaaattaaagcc
ttcgtaccagaagagttttgggacgttcatgccaatctattaacggcgaaagacagtgac
ctgcgcatgcaagtggctaaatacaatgacaaggccttcaagccaaccaacaagaagcaa
acggatactgcgttagctgacttagaaggggctgaatataaggttattagtcgtgattct
aagccaacgcagtctcgcccgtcagccccctttatcacctcgacgttgcagcaagctgcc
agcacacgtttaggttttggtgtaaagaaaaccatgatgatggcccagcgcttatatgaa
gctggccacattacgtacatgcgtaccgattcaaccaatttaagcaaagaagcggttgat
gcgtgtcgtgattacattgacgataattttggtgctaaatatttaccagaaaatgccttg
aagtacggcagtaaagagggcgcccaagaagctcacgaagcgattcgtccgtcgaatgta
ttgctcaagtctgaatcattatcagaaatggaacgtgatgcacagcgcctgtatgagctt
atttggcgtcaattcgttgcctgtcaaatgacgcctgctaaatatgatgcaagcactatt
cgcgtatctgctaatggttatgaattaaccgcgaaagggcgtgtgttgaagtttgatggt
tggacaaaagtacaaaaccctcagcgcaaaaaaggcgaagaagatttcttgttgcctgac
gtgaaagagggggaaagcctgagtcttaaacagcttgaccccaaacagcatttcactaaa
ccagtggcacgattcaatgaagcctctttggtaaaagaattggaaaagcgggggattggt
cgtccatctacctacgccagtatcatctcgacgattcaagatcgcggttatgtgcgcctt
gaaagtaagcgtttttacgctgaaaaaatgggtgagatcgttaacgacagattgctcgag
aacttcgacaatctgctgagttttgatttcactgccaagatggaacaagagttagatgaa
attgccaatggtaaagtgtcttggaaagacgtattaaatgatttttacggcgattttgag
aagaagctgcatctagcggaaaaagatccagacgatggcggcatgcgcttaaatcaggct
gtacccacggatattgaatgtcctaaatgcggtcgcccgatgaatgtgcgcaccgcaagt
acaggggtgtttttaggctgctctggctacaacttaccaccaaaagagcgttgtactggc
acgatgaaccttacctcaggtgacgaagtcatcaaggtagacgacgaagaagagctcgaa
actgagttactcagatcgaagcgtcgttgtccgatttgttctactgccatggacagctac
ttggtagatgaaacgcgcaagttacatgtgtgtggtaatacgcctacctgcccgggtatt
gaagttgaaatgggtacctttaaaattaaaggctacgatggaccgattatcgaatgtgat
aaatgtggttcagacatggagctcaaaaacggtcgctttggtaagtattttggctgtacg
aatgaagagtgtaagaatacccgtaagttacttagaaacggtgaagctgcgccgcctaaa
gaagacccggtggatttaccggagcttgagtgcaccaagtcagatgcgcattttgtgcta
cgtgatggcgcgtcaggtattttcatggcggcacataatttccctaaatctcgggaaacc
cgtgctccactcgtagctgagctggctcgttttagagatcgtatttcacctaagttttat
tacctagcagatgcgccggcgaaagatcctgacggaaatgacaccttggtccgctacagt
cgtaaaacaaaacaacaatatgtgatgagtgaaaacgaagaaggcaaagccacaggctgg
tctgcttggtacacagataacaaatggacagtggaagacaagcgtaaaaaagcaaaatag
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