Glaciecola sp. 4H-3-7+YE-5: Glaag_2132
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Entry
Glaag_2132 CDS
T01483
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Pathway
gag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Glaag_2132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gag03019
]
Glaag_2132
Enzymes [BR:
gag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Glaag_2132
Messenger RNA biogenesis [BR:
gag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Glaag_2132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
ERCC3_RAD25_C
P-loop_SecA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEE23077
LinkDB
All DBs
Position
complement(2493542..2494852)
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AA seq
436 aa
AA seq
DB search
MSFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL
ELLNRGKHARGNQARALVLTPTRELAAQVGASVVDYGKDLPLRSAVVFGGVGINPQMIKL
RKGVDILVATPGRLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHDIKKVLKLLPAKRQ
NLLFSATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPVDKNQKTPALIRMIKD
NDWQQVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVAT
DIAARGLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLADIER
FTKQIIPRKGIEGFAPVHDLPESRLDNRPIKPKKPKKPRVQHRDGQRSGDNARGHYSGKR
RGNGPKNASPRRSASE
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgccgatttaggcttatcccccgccattttgtctgccgttacagccaaaggc
tacaccgacccatcgcccattcaagcacaagctattcctgccatactagaaggtaaagat
attatggcagccgcacagactggcacaggtaagactgcgggatttactctccctttgctc
gaattgcttaatcgtggcaagcatgcccgtggtaaccaagcccgagcgcttgtattaacg
cctacccgcgaactagccgctcaagttggtgccagtgtcgtcgattatggcaaagattta
ccgctacgttcagcggtagtatttggtggtgtaggcattaacccacaaatgattaagcta
cgtaagggcgttgatattttagtcgccacacccggtcgcttgttggatctatataatcaa
aatgctgttcgatttgacgatcttgaagtgcttgtacttgatgaagctgaccgtatgtta
gatatgggctttattcatgacatcaaaaaggtcttaaagctacttcctgcgaaacgtcaa
aatcttctattttcagcgaccttctcggacgatattcgcgccttagccaagggcttggtg
aacaaccctgttgaagtctcagtgtctccgccaaacacgacggtagaagccgttgagcaa
tctatttgtccggtcgataagaatcaaaaaacacctgccttgatccgtatgatcaaagat
aacgattggcagcaagtattggttttcagccgcacgaaacacggcgccaatcgtatcgca
aaacaacttgaagcacgaggcatcacctcagctgccattcacggcaacaaaagccaaggt
gcacgcacaaaagcattggctgagtttaaaagtggaaaagtacgcgcgttagtcgctaca
gatatcgctgcgcgcggactagacattagtcagttaccccaagtcgtaaactatgacttg
ccgaatgttgcagaagactatgttcacagaatcggtcgcacaggtcgtgctggtgcaagt
ggccaagcgatttcattagtaaccgcagacgaattttcattgttggccgacattgagcgt
tttactaaacaaattattccacgcaagggaattgaagggtttgcacctgttcatgacttg
cctgagtcacgcttagataacagacccatcaagcctaaaaagcccaaaaaacctcgcgtt
caacacagagacgggcaacgctctggtgataatgctcgcggccattactcaggtaaacga
agaggcaacggccctaaaaacgctagccctcgtcgctcagcgtctgaataa
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