Glaciecola sp. 4H-3-7+YE-5: Glaag_2856
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Entry
Glaag_2856 CDS
T01483
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gag03016
]
Glaag_2856
Enzymes [BR:
gag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Glaag_2856
Transfer RNA biogenesis [BR:
gag03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Glaag_2856
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
ODAM
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
AEE23793
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All DBs
Position
complement(3328597..3329772)
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AA seq
391 aa
AA seq
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MQYISITTNETLNAYCAQLAKAEAIAVDTEFVRTRTLYPKLGLIQIYDGQQIALIDPLEI
SDFSALKAILTDENIVKVLHSCSEDIETFICALDIVPKPIFDSQFAAAIVGMGASLGYAK
LVEVMLDIQVDKGESRTDWLARPLSPEQCRYAAYDVLYLYQLYPTLRDKARAQGRQAWVF
AEMDNLSRKKLSQIPYELLYLNIKNNWHVKGKSLYVLQQLAAWRAKEAQQRDLALNFVVR
ETNLVEVAKKLPTSKNALHQISGLTPQEIRINGQAMLDIVAAAEQVDAAQYPQPVERLVD
FSRFKKVAAAVRQVCLQTAEKLDVPVELIGSKKQINQLIKWSWFNEDDTRAQGLLPDLLE
GWRGEHLRDALSNVDGLNIVAATKVGESTDA
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
gtgcaatatatatcaattaccacaaatgagacgttgaacgcctattgcgctcaattggca
aaagccgaagcgattgccgtggatactgagtttgtgcgcacccgcactttgtacccgaaa
cttggcttgattcaaatatacgatgggcagcaaatcgcgctcattgacccgctagaaatc
tctgactttagtgccctaaaagccattttgactgatgaaaatatcgtcaaagttttgcac
tcatgttctgaagatattgaaacctttatctgcgcactggacattgtgcctaaacctatt
tttgatagtcagttcgctgcggccatcgtcggtatgggagcgtcattaggctatgctaag
ctggttgaagtgatgcttgatatccaagtagacaaaggtgaatcgcgcaccgattggtta
gctaggcctttatcccctgagcagtgccgatatgctgcctatgatgtactgtacttgtac
cagttgtaccccacattgcgtgataaagcccgcgctcaaggtcgtcaagcttgggtgttt
gctgaaatggataatttgtcacgtaaaaaactaagtcaaatcccttacgaactgctgtac
ctgaatataaaaaacaattggcatgtaaagggtaaatctttgtatgtattgcagcagctt
gccgcgtggcgagctaaagaagcacaacagcgcgatttggcactgaattttgtcgtacgg
gaaaccaatttagttgaagtagcgaaaaaactgccaacgagtaaaaatgctctacatcaa
atatctggccttaccccacaagaaattcgcatcaacgggcaagcaatgcttgatattgtt
gctgctgctgagcaagtggatgccgcgcaatatccgcaacctgttgagcggctggtggac
ttctcccgctttaaaaaagtcgctgcagcagtgcgccaagtgtgtttgcaaactgcggaa
aaacttgatgtaccagtagagctaattggttcgaaaaagcaaatcaatcagcttataaag
tggagttggtttaacgaagatgacactcgtgcacaagggttgctgcctgatttgttagaa
gggtggcgtggcgagcatttacgcgacgctttatcgaatgttgacggtttaaatattgtg
gccgcaaccaaagtaggggagtcaacagatgcttaa
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