Glaciecola sp. 4H-3-7+YE-5: Glaag_2928
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Entry
Glaag_2928 CDS
T01483
Name
(GenBank) DNA topoisomerase I catalytic core domain protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gag03032
]
Glaag_2928
03400 DNA repair and recombination proteins [BR:
gag03400
]
Glaag_2928
Enzymes [BR:
gag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Glaag_2928
DNA replication proteins [BR:
gag03032
]
Prokaryotic type
DNA Topoisomerases
Glaag_2928
DNA repair and recombination proteins [BR:
gag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Glaag_2928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AEE23865
LinkDB
All DBs
Position
complement(3401185..3402171)
Genome browser
AA seq
328 aa
AA seq
DB search
MENFIIRKPFGDTFTYQYPSGKTVKNKGIRRWVKSLAIPPAWQEVQIDLDRSAKVFAVGR
DAQNRKQYIYNPKWTERANEQKFERILRFAKALSTMRRVTGQHITQRPIDEKVVLACMTR
MLDDAFFRPGNPTYTKDNETYGLTTLRVKHMNISGNHVEFDYVGKSHQQQHREVDDKHVA
KVLTQLEKMTGYELFDIKLPEGERKKVTSQDLNQYIAQVMGENFSAKDFRTWAGTVLMAV
ALEQIGPANDQKLSQSNVLAAVKKVASELGNTPAVCRANYIHPNVIFHYESGRTLAYFRK
QLKRTKTKYFSPDEKATLKLLEYLVDTN
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattttatcattcgcaaacctttcggagatacgttcacctaccagtatccgtct
ggtaaaaccgttaaaaataaaggcattaggcgctgggtgaagagtctagcgataccgcct
gcatggcaagaggtgcaaatagatctcgatcgaagcgctaaggtatttgctgttggccga
gatgcacaaaatcgcaagcaatatatttataaccccaaatggaccgagcgggcgaacgag
caaaaatttgaacgtatattacgtttcgctaaagcattatcgactatgcgccgcgtcact
gggcagcatatcactcagcgacccattgatgaaaaagtggtgctggcttgcatgacgcgt
atgctcgatgatgctttttttcgccctggtaaccccacttataccaaagataatgaaacc
tacgggcttacgacgttaagggttaaacatatgaatatttcaggtaatcatgtggagttt
gattacgtagggaaaagccatcagcaacaacacagagaagtagacgataaacacgtggcc
aaggtgttaacacaacttgagaaaatgacaggttatgagttgttcgatattaagttacca
gagggggagcgcaaaaaagtaacctcccaggatttgaaccaatatattgcccaggtgatg
ggggagaactttagcgcgaaggattttagaacctgggcgggaactgtgcttatggctgtt
gcacttgagcaaattggccctgcgaatgatcaaaagctcagccaaagtaatgttttggca
gcggttaagaaagtggcgagtgagctagggaatacgcctgcggtgtgccgtgcaaactat
attcatcccaatgtgatattccattatgaaagtggaagaaccttggcttattttcgcaag
caacttaagcgcactaaaacgaagtatttcagcccagatgaaaaagccacattaaaactg
cttgaatatttagttgacacaaattga
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