Glaciecola sp. 4H-3-7+YE-5: Glaag_4566
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Entry
Glaag_4566 CDS
T01483
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Pathway
gag03420
Nucleotide excision repair
gag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Glaag_4566
03430 Mismatch repair
Glaag_4566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gag03400
]
Glaag_4566
Enzymes [BR:
gag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Glaag_4566
DNA repair and recombination proteins [BR:
gag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Glaag_4566
MMR (mismatch excision repair)
Other MMR factors
Glaag_4566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
DEAD
ResIII
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AEE25471
LinkDB
All DBs
Position
pGLAAG01:294453..296525
Genome browser
AA seq
690 aa
AA seq
DB search
MHYNLQQIQFIKSPLKNILLVAPPGSGKTQVAGERIQAMERYGVDMKKMLVTTFNVSAAE
ELKERLINSGMVKLPTIRNYHKVGARMNRFFINNGLLPNAELITQDWRIKKLAIEALKQS
RKSNTQTPALNINDDSVIDEFVGFIGFAKSDLNAPDIMLIRMGLGDEYKEFVEAFNVFER
LRIANSIQTFHDLIYDPVVVLKNNPDAVNLITNRLDFIIIDEFQDINPIMFILLEFIAGE
TARFIGIGDANQTINSYRGSDPSFIMSAFTEKRPDTQSMALQQTYRFDDNIAICANALIQ
HNKVKAGNLCVSALNTPKSKITIGYYENNGGTSYRCPEQHSLIRTIRHHQSRGKPLKDIA
ILLRTFLLAPWIEAALIREQIPYRLADSKSSIMLPAVKGVIAFANTFSKNPQYQSFSVEL
ASLLNFPFLAIRNDQIRLLLPFIQRGKRIDEYALKRALPGVKDFIIERVSGRLNALNTAL
ALPYKQALESYFDGHVETKYHELLAKRPSEKERKNLALIKSFVHTAGTFSEPEQFMNALS
LNKNTGDAVILTSLHSSKGCAWPVVIIPGCVETILPYEHPEQTTPIEDERRLMYVGITRA
RKHLHLITNSQPEFTKELKASSGKPPLSITVSPDKPSRFLYEMQINDANLMCKAIRDNSQ
NNQDTHGPRILIERYLGALYQIKLNEKRND
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcattacaaccttcagcaaattcagttcattaaatctccattaaaaaatattttactt
gtcgcacctcctggcagtggtaaaacacaagtcgcaggagagcggatacaagcaatggaa
cgttatggggtagatatgaagaaaatgctcgtgacaacgtttaatgtttccgccgctgaa
gagttgaaagaacgtttaataaattccggcatggtgaagctacccactatccgcaattat
cataaagtcggcgcaagaatgaatcgattctttatcaataatggcttattacccaacgcc
gagttaatcacacaagattggagaataaaaaaactcgcaattgaagcattgaaacaatct
cgtaagtccaatacccaaacgcctgcactaaatataaacgatgattctgtaatagatgag
tttgttggctttatcggatttgcgaaaagtgatcttaatgctcccgatatcatgctcatt
cgtatgggacttggtgatgaatacaaggaatttgttgaagcgtttaatgtctttgaaagg
ctacgtattgccaactcaatacaaacatttcatgacttaatttacgatcctgtggtggta
ctgaaaaataatcctgatgcggtgaacttgataacgaatcgtcttgatttcattatcatt
gatgagtttcaagatattaacccaatcatgttcatacttttggaattcatcgcaggtgag
acagcgagatttattgggattggtgatgctaaccaaactatcaacagctatcggggcagc
gatccctcgttcattatgagtgcgttcacagaaaaacggcctgacacacaaagcatggcg
ttacaacaaacgtaccgcttcgatgacaatatcgctatctgcgccaacgcgttaatacaa
cacaataaagtcaaagcaggcaatctatgcgtttcagcactgaatacaccaaaaagtaag
atcaccatcgggtactatgaaaataatggcggtacctcttatcgatgccctgaacaacac
tcacttatacgtactattcgccaccaccaatcacgaggaaaaccactaaaagatattgct
atattactgcgcacgttccttttggcaccttggatcgaagccgcgttaattcgtgaacag
attccttatcgattagcagattccaagtcttccattatgctccctgccgtaaaaggggta
atcgcattcgccaatacgttttccaagaatccacaatatcaatctttctcggtggagctg
gcatctctattgaattttccatttttagctattagaaatgaccagataagactattgctt
ccatttattcaacgggggaaaaggattgatgaatatgcattgaagcgtgcgttaccgggc
gttaaagatttcatcattgaaagagtgtctggtcgcttaaatgcgttgaatacagcacta
gctttaccatataagcaagcgcttgaaagttattttgacggtcatgtcgaaacgaaatac
cacgaactgttagcaaagcgcccttcggaaaaagaaaggaaaaatctggcccttatcaaa
tcctttgttcacaccgctggaacattctcagaaccagaacagtttatgaatgccctctcc
ttaaacaaaaataccggtgacgccgttattctaacgagtcttcatagctccaaaggctgt
gcttggcctgtggttattatccctggttgcgttgaaactattttaccttacgaacatcca
gaacagactaccccaatagaagatgaaagacgcctgatgtatgttggaataacaagagct
agaaaacaccttcatttaatcactaattcacaacctgaatttacaaaagagctgaaagca
agctctgggaaaccccctttaagcattaccgtatccccagacaaaccaagtcgctttcta
tatgaaatgcaaatcaatgacgccaatttaatgtgtaaagcaatcagggataactcacag
aataatcaagatacccatggtccgcgaatactgattgaacgctacctaggtgctctctat
caaataaaactcaatgagaaaagaaatgactaa
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