Candidatus Gromoviella agglomerans: Gromo_00080
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Entry
Gromo_00080 CDS
T07728
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gagg
Candidatus Gromoviella agglomerans
Pathway
gagg03420
Nucleotide excision repair
gagg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gromo_00080
03430 Mismatch repair
Gromo_00080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gagg03400
]
Gromo_00080
Enzymes [BR:
gagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gromo_00080
DNA repair and recombination proteins [BR:
gagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gromo_00080
MMR (mismatch excision repair)
Other MMR factors
Gromo_00080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
Viral_helicase1
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
UFX98200
LinkDB
All DBs
Position
complement(92515..94833)
Genome browser
AA seq
772 aa
AA seq
DB search
MINSRAFFFDIFGLNNEQISAVESPLQSTILVFAGPGTGKTRILSCRYIYILLNHELNSD
CPIMALSFTNKAANEIRERIHIYADKIESKYPIKNAIQNQWIGTFHSICLKILRQNLSLT
EYFNGMQVIDMQSQSKVIENLLELKDKNKKLKNIATNFINQFKESVDYFEYFESLLTSKL
SNTSQISELDSKFWTRYMQNHSEYKSLFENIHPSILINKYQQHLSHHGMIDFSDLISKTV
ELFCLNPDILEKYREYFKAILVDEYQDTNHMQRKLIKLLNHSKCNLFCVGDDDQSIYSWR
GAGDSMLNFTHDFENANILKLSQNYRSTVEIIHTAQSLIRHNVNRVDKNLSSSHNIHGNS
ITITQYDDYLNEAKIISRQISMICAENSTKSIAILVRNNAQIIPFEDEFTVQKIPYKIVG
ESKFYDYKEIKYIVYYIQSAMNIMDDISFEKILNFPKRGLGEVFLSKLKGMAKSSLQESC
VSLCNKSNSEFSEKTISSVSKLITVLSTFKREMDSNNDHVFDIKQFNLFDEKILNQLKIL
TKNSIAKAILHLLLNSGIYEDCIALDSIDARSSYSRLDLLKRLIEMANNFANIHDFLDAI
SLHVDNSGHNELQNIFIMTMHGAKGLEFDDVFLPGWEMGILPNGRALDEKNGIEEERRLA
YVAITRAKKNVNISYSASRRVDGLWKIAVPSSFIIELDKRYVTSSLDRFEKFHKLRKVSH
QHSICSEYKIGTVVEHAQFGTGLIISIDREILSIRFESGVKHILKSFVKKKC
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgataaactctcgagcatttttttttgatatatttggtctgaataatgagcaaatatct
gcagttgaatctcctttgcaatcaacaatattagtatttgctggccctggaacaggaaaa
acccgcatactgtcttgtagatacatttacattttgttaaatcacgaattaaattctgat
tgtccaattatggctctaagttttactaataaagcagcaaatgaaattcgagagcgtatt
cacatatatgctgataaaattgaaagtaaatatcctattaaaaatgctattcagaatcag
tggataggaacatttcatagtatttgtttaaaaattctcagacaaaatttgtctctcact
gagtactttaatggaatgcaagtaatagatatgcaaagtcaatcaaaagtgattgaaaat
ttacttgaattaaaagataagaataaaaaattaaaaaatattgctacaaatttcattaat
caatttaaagaatcagttgactattttgaatattttgaatcattactaacatcaaaacta
tcaaatacaagtcagatatctgagttagatagcaaattttggacgcgttatatgcaaaat
cattcggaatataaatctttgtttgaaaatattcatccaagtatcttgataaataaatat
cagcaacatttatcacatcatgggatgatcgatttttctgatcttatttccaaaactgtt
gagttattttgtctaaatcctgatatcttggaaaagtatagagaatactttaaagccata
cttgtagatgagtatcaagacacaaaccatatgcaaagaaaattaattaaattattaaat
cattcgaaatgcaacctattttgtgtaggagatgacgatcaatcaatctattcttggaga
ggtgcaggcgatagtatgctaaattttactcatgattttgaaaatgcaaatatattaaaa
ttatcgcaaaattatagatcaacagtggagattatacacaccgcgcaatctctcatacga
cataatgtcaacagagtggataagaatttatcctctagtcacaatattcatggaaattct
ataactatcactcagtacgatgattatttgaatgaagcaaagattatatccagacaaatt
tccatgatttgtgcagaaaattctacaaaatctattgcaatattagttagaaataatgct
caaataattccatttgaagatgagtttactgtgcaaaaaattccatacaaaattgttgga
gaatctaaattttatgattacaaggaaataaaatatattgtttattatatccaatctgcg
atgaatattatggatgatatttcttttgaaaagattttgaattttcctaaaagaggcctt
ggagaggtgtttttatcaaagctaaaaggaatggcaaaaagttctttacaagagagttgt
gtctctctttgtaataagtcaaatagtgagttttctgaaaagactatatcatctgtcagt
aaattaattactgttttatcaacattcaaaagagaaatggactcaaataatgatcatgta
tttgacataaaacaattcaatttgtttgatgaaaaaattctaaatcagctaaaaatatta
actaaaaattctatcgctaaagctattttgcatctattgctgaatagcggcatatatgaa
gattgtattgcattagactctattgatgcacgatcatcttattcaagattggatctatta
aaaagattgattgaaatggcaaacaattttgcaaatattcatgattttttagatgcaatt
tctttgcatgtggacaattctggtcataatgaattgcaaaatatatttataatgacaatg
catggagctaaaggtttggaatttgatgatgtttttttgccaggatgggagatgggtatt
ttaccaaatggccgagctcttgatgaaaaaaatggaattgaggaagaacgtcgcttggcg
tatgttgcgatcactagagcaaaaaaaaatgttaatatatcttactccgcatcaagaaga
gttgatgggttatggaaaattgcagttccttcatcgttcataatagaattagacaaaaga
tacgtaacaagctcacttgatcgttttgaaaaatttcataagcttcgcaaagtctctcat
caacattcaatctgttcggaatacaaaatcggcacggttgtcgagcatgctcaatttgga
acaggccttataatatcaatcgatcgcgaaattttatcaatcagatttgaaagtggagta
aaacatattttaaagagttttgttaagaaaaaatgctga
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