Candidatus Gromoviella agglomerans: Gromo_00250
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Entry
Gromo_00250 CDS
T07728
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gagg
Candidatus Gromoviella agglomerans
Brite
KEGG Orthology (KO) [BR:
gagg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Gromo_00250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gagg03021
]
Gromo_00250
Transcription machinery [BR:
gagg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Gromo_00250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
AAA_11
Phage_XkdX
Motif
Other DBs
NCBI-ProteinID:
UFX98357
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All DBs
Position
complement(288738..290672)
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AA seq
644 aa
AA seq
DB search
MTRDDLIKCVQDKYVQKGWVTQEEFLDISCNQDLSVDDVEYAIEILSERNIIVIDDKEEF
IRKRRFAMEDSEDANLTSIDPTRLYLREMGHMNLLSREEEIEIAKRIEDAHERIVNAMYT
NVIVFDMVYVDCKKFKNGEILLRDFIDVHEMHRVLFLADLPQDEVIDEVYDENVDDIDEE
IEMEFSKLTKKKPQTTPELKCIDEEDISDIKKTEEEEVEDLSVDSEIDNKSIAEMEDKIS
AIIDEYINDFMKYYDKFYDHVVASKKLIEVNEDNASLEYTSMKSAIVDAFSKFKLSDKKM
RLIVDEFEMISKTLVSAKSQSLALLTKHNIPRQKFLNAYEESDTEMKWIEKILDVNKNEA
LINEIRSIICNAHSFVLRYRVSVDYFRKTFKIIKSGIKDANQAKEEMIVANLRLVISIAK
RYLNRGLQFLDIIQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRI
PVHMIETINKLSRAGRLLVNSSGREATNEEIGKYLGIDAEKINKIKDIAKEPISLQTTVG
DEDGELGDFIEDPNGHSPEKIAWDADLSNNVSASLSALNAREERVLRMRFGIGTSSESTL
EEVGQQFGVTRERIRQIEAKALRKLRHPSRSKNLRVFVETPPIK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgacaagagatgatctaataaaatgtgttcaagataagtatgtccagaaaggttgggta
actcaagaagaatttctcgatatatcttgcaatcaggatctctcagttgatgatgtggaa
tatgctatagagattttatctgagagaaatatcatcgtgatagatgacaaagaagagttt
ataagaaagagaagatttgcaatggaagattcagaagatgcaaatcttactagtatagat
cctacaaggctgtatttaagagaaatggggcacatgaatctattatcccgtgaagaagaa
atagaaattgctaaaagaatagaagatgctcacgaaagaatagtgaatgctatgtacact
aatgttatcgtgtttgatatggtatatgtggattgtaaaaaatttaagaatggagaaatt
ttgttgcgtgatttcatagatgtgcatgaaatgcatcgagtcttatttttagctgatcta
cctcaagatgaagttattgatgaggtttatgatgaaaatgtagatgatatagatgaagaa
atcgaaatggaattttcaaaattgactaaaaagaaacctcagacaactcccgaattgaaa
tgtattgatgaagaagatatttctgatattaaaaaaacagaagaagaggaagtggaagat
ttgtctgtagattctgaaattgataataaatctattgctgagatggaagataaaataagt
gcgattattgatgaatatataaacgattttatgaaatattacgataagttttatgatcat
gtagttgcatcgaaaaagttaattgaagtgaatgaagataacgctagtttagagtataca
tctatgaaaagtgctattgtagatgcgtttagcaaatttaagctctctgataaaaagatg
cgtttgattgttgatgagtttgaaatgataagcaaaactctcgtttctgcgaaaagtcag
tccttagctttattgactaagcataatattcctagacagaaatttcttaatgcgtatgaa
gaatctgatacagaaatgaaatggatcgaaaaaatacttgatgttaataaaaatgaagct
ttgattaatgaaattcgatcgattatttgtaatgctcacagttttgttttacgatatcgt
gtatctgtggactattttagaaaaacgtttaagattatcaagtctggaataaaagatgct
aatcaggcaaaagaagaaatgattgttgcaaatttgagacttgtcatatctattgctaaa
aggtacttgaatagaggtcttcaattcctcgatataatacaagaggggaatatcggtttg
atgaaggcagttgaaaaatttgaataccgtagaggttacaaattttctacttatgcaact
tggtggataagacaagctataactcgtgctattgcagatcaagccagaactataagaatt
cctgttcatatgatagagactataaacaaactttcaagagctggtagacttttggtgaac
tcttccggaagagaggctactaacgaggaaattggcaaatatcttggaatagatgcagaa
aaaatcaataaaattaaggatattgcaaaagaacctatcagcctccaaactactgttgga
gatgaagatggagagttgggtgattttatcgaagatccaaatggtcattcgccagaaaaa
attgcttgggatgccgatttaagtaataatgtttcagcatcgctctctgcattaaatgct
agagaagaaagagttttaagaatgagatttggaatcggtacatcttctgaatctacactg
gaagaagttggacagcaatttggtgttactcgagagcgaattcgtcagattgaggcaaaa
gcattgcgcaagttacgccacccttcgagatcaaaaaatctgagagtttttgttgaaacc
cctccaatcaagtaa
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