Candidatus Gromoviella agglomerans: Gromo_00468
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Entry
Gromo_00468 CDS
T07728
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gagg
Candidatus Gromoviella agglomerans
Pathway
gagg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gagg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gromo_00468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gagg03021
]
Gromo_00468
03400 DNA repair and recombination proteins [BR:
gagg03400
]
Gromo_00468
Enzymes [BR:
gagg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gromo_00468
Transcription machinery [BR:
gagg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gromo_00468
DNA repair and recombination proteins [BR:
gagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gromo_00468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UFX98551
LinkDB
All DBs
Position
514081..518184
Genome browser
AA seq
1367 aa
AA seq
DB search
MNMFNFKGSNRVADVDSMFENFDAISLSIASPDMIRSWSSGEVKRPETINYRTGKPERDG
LFCCRIFGPVRDYECICGKYKRSRYAGKSVGVVCEKCGVEVCLSKVRRFRMGHIDLASPV
AHIWFTKSVPSRVATLLGMSMKELDAILYFEKYVVVDPGTTALEKNQLLSEEEYLEEVNQ
CEETGDEFVAFIGAEAIKNMLSSLDLLAERDALLHEISATNSDIKKKKAMKRLDMVESFI
RSGNKPEWMMIDVLPVLPPDLRPLVPLDGGRFAVSDLNDLYRRVINRNNRLRRLIDLRAP
DIIIRNERRMLQESVDALFDNSRRPRPILGMNKRPLKSLSDSFRGKQGRFRQNLLGKRVD
YSGRSVIVVGHDLKLHQCGLPKEMAIELFKPFVLNMLRRHGYAQTLQSAKKMIEVGASEV
WDVLEEVVSGHPVLLNRAPTLHRQSIQAFEVVLTDGKAIKLHPLVCSAFNADFDGDQMAV
HVPLSIEAQIEARVLLMSSKNIRSPANGSFSIVPTKDMILGLYYLTYMVNPDSNDKDCQR
FASVSDVISALNSKVVYMHQKIILRLSLSRPRFVVTTPGRCVLFHAFETELDEVSSGLLS
FDNVNFVFSSKTIKLFFTDIAKKVPDSCIVKIADILKDLGFYYATMSGISFCMKDMIVPT
DKQEVVAQTEAMVSQYREQFINGLLTDSERYNKVLAAWSKATEVLYGSLMKKIKAENDGF
FNNIHVISASGARGSEGQIRQLCAIRGMMTDTKDEVIEVPVVHSFIEGLTVIEYFISTHG
GRKGLMDTAFKTANAGYLTRRLVDVAQDCIICEEDCGCEEGIYVRAVKRGGETIVSLFEA
IFGRFTAKDVVSKSGEVICSRNEYISEELAAKISMYVDAVWVRSPLVCGSKDGSVCKMCY
GLDLAKSHIVDMYESVGIVAAQSISEPGTQLTMRNFQAGGLAQADTGESAIIASVGGKAV
FDNCRFIESEYNTISVGTSSYIVLIDEFGDEVARYKVPYGSLMNIKDGQQVLANDVLASW
DPYATPLISEFSGTVVFRHLIDGVSLKEIVDDVTGISVVSVLDWKTLSKGDKISPSIVVK
LEDGSEVSYSVLPRSVLQVSDGDVVSVGDVLARLPKEMLKSKDITDGLQRVSELFEVKKQ
KEVGVMVARNGSISIDYDLKVGNIVYVNTMDGERDSYFIPRSRKIMVQNGDKVRAGDLIT
DGEASLHDILAILGVEKFADYLINEIQDVYRMQGIKISNKHFEVMVRQMLLRVNIVDPGD
SEYMENSVISFHNYINVRKAMLEEGKRPPVGVRRLDGITKASLASDSFMSAASFRAPIPI
ITEAAINNMVDLLRSNKAASIAGKLIFAGTGGVTRSKKMKKFNMDLH
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgtttaattttaagggatctaatagagttgcagatgtagattcaatgtttgaa
aattttgatgctatatcattatcaatagctagtccggatatgatacggtcatggtctagt
ggagaagttaagcgtccagagactataaactataggactggcaagcctgaaagagatggt
ttgttttgttgtcgcatatttggtcctgtgagagattatgagtgtatatgcggaaaatat
aaacgcagtagatatgctggcaagtcagtaggtgtggtttgtgaaaaatgcggagtggag
gtttgtttatcaaaagttcgtagatttcgaatgggtcatatcgatttggcttcgcctgta
gctcatatatggttcacaaagtcagttcctagtagagttgctactcttttgggtatgtct
atgaaggaattggatgctatcctttattttgagaaatatgttgtggttgaccctggcact
acagctcttgaaaaaaatcaacttctttctgaagaagaatatttagaagaagtaaatcaa
tgcgaagaaacaggagatgagtttgtagcttttattggagctgaggctataaaaaatatg
ttgtcatctttggatttgctggctgagcgtgatgcgttgttgcatgaaatatctgctacg
aattctgatataaagaaaaagaaggcgatgaagagattggatatggtggaatcttttatt
cgcagtggaaataaaccagaatggatgatgatagatgttttgccagttttgccacctgac
ttgaggccgttagtgcctttagatggtggtagatttgcagtttctgatttgaatgatttg
tatagaagagttattaatagaaataatcgtcttcgtaggttgattgatttaagagcccca
gacataattattcgaaacgagaggagaatgttacaagagtcagttgatgctctgtttgac
aatagtagaaggcctcgtccaattttggggatgaataagcggcctttgaagtctttatct
gactcttttcgtgggaaacagggtcgttttaggcaaaatttacttggtaaaagagttgat
tattctggtaggtctgtaattgttgtagggcatgatttgaagcttcatcaatgtgggttg
cccaaagagatggcaatagagttatttaaaccttttgtgttaaatatgctacgtcggcat
gggtatgctcagactttgcaaagtgcgaaaaagatgattgaagttggggctagtgaagtt
tgggatgtgcttgaagaagtcgtttctggccatccagttcttttaaatcgtgctccaacc
ttgcataggcagagtattcaagcgtttgaggttgtgcttacagatggaaaggcaataaaa
ttgcatccattagtttgtagtgctttcaatgctgatttcgatggagatcaaatggcggtt
catgttcctttgtctattgaggctcagattgaagctagagttttgttgatgtcttctaaa
aatattaggagccctgcaaatggttcattttctatagtacctaccaaagatatgatttta
ggtttatattacttgacttacatggtgaatcctgattctaatgataaggattgtcaaaga
tttgcgtctgtttctgatgtaatttctgcattaaattctaaagttgtttatatgcatcag
aaaattattctgagattatctttaagtaggcctagatttgttgttacaactcctggtagg
tgtgttctatttcatgcatttgaaactgaacttgatgaagtgagttctggattgttgtct
tttgataatgtgaattttgtcttttcgtctaaaacgataaagttgttttttactgatatt
gctaagaaagtaccagatagttgtatagttaagattgcagatatattaaaagatttaggt
ttttattatgctactatgtcaggaatttctttttgtatgaaagatatgattgtgccaact
gataagcaagaagttgttgctcaaactgaggcaatggtctctcaatatagagagcaattt
ataaatggattacttactgattctgaaaggtataacaaagttcttgcggcttggtctaag
gcgactgaggttttgtatggatctctgatgaaaaaaataaaagctgaaaatgatgggttc
tttaacaatatacatgttataagtgcttctggagcaagaggttctgaagggcaaattcgt
caactttgtgctattaggggtatgatgactgataccaaagatgaggttattgaagtgcca
gttgtgcattcttttatagagggtttgaccgtgattgaatattttatttctactcatggt
ggtagaaaaggtttgatggatacagctttcaaaacagcgaatgctggttacttgactaga
agattagttgatgttgctcaagattgtataatttgcgaagaagattgtggttgtgaagaa
ggtatttatgttcgagctgttaagcgagggggagagaccatagtttcattgtttgaggca
atatttggtagatttactgcaaaagatgtggtctctaaaagtggagaggttatttgtagt
agaaatgagtatatttctgaagagttggctgcaaaaatttcaatgtatgttgatgctgtg
tgggttaggtcacctttggtttgtggctctaaagatggaagtgtgtgcaaaatgtgttat
ggattggatttggctaagtctcacattgttgatatgtatgaatctgttggaattgtagct
gcgcaatctataagtgagcctggtactcagcttaccatgcgtaactttcaagcgggtggt
ttggctcaggcagatacgggagaatctgcgattattgcatctgttgggggaaaggctgtg
tttgataattgtagatttattgagtctgaatataatacaatttctgttggtacatctagt
tatatcgttcttattgatgaatttggagatgaggttgcgaggtataaggtgccttatggt
tcattaatgaatattaaggatggccaacaagtgttagctaatgatgttttagcttcatgg
gatccttatgcaacccctcttatctctgaatttagtggaactgtagtgtttagacatttg
attgatggtgtctctttgaaggaaattgtcgatgatgttacaggtatatcggttgtttct
gtcttggattggaagaccctatctaagggtgataaaatttctccatctattgttgtaaaa
ttggaagatggatctgaagtgtcttattctgttctgccgagatctgttttgcaagtttct
gatggagatgttgtttctgttggtgatgttttggctcgtttgcctaaagagatgttaaaa
tctaaagatattactgatggtttgcagagagtctctgaattatttgaagttaaaaagcaa
aaagaagttggtgtgatggttgctagaaatggttcaatatctattgattatgatcttaag
gttggaaatatagtatatgtaaatactatggatggagagcgtgatagttatttcattcca
cgtagtagaaagattatggttcaaaatggagataaggttcgtgcaggagatttgataacc
gatggagaggcttctctgcatgatatattagctatattgggagttgagaaatttgctgat
tatttaatcaatgagattcaagatgtctacagaatgcaaggaataaagataagtaataag
cattttgaagtaatggtgcggcaaatgctactaagagtgaacattgtagaccctggtgat
tctgaatatatggaaaatagtgtcattagttttcataactatattaatgttcgtaaggca
atgttagaagagggcaaaaggcctcctgttggtgtgcgtagattagatggtatcacaaaa
gcttctctggcaagtgattcttttatgtcggcggcatcttttagagctcctatacctata
attactgaagctgccataaataatatggttgatttattaagaagtaataaagctgcatct
atagcgggcaagttaatatttgctggtactggaggagttactagatctaagaaaatgaaa
aaatttaatatggatttacattga
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