Candidatus Gromoviella agglomerans: Gromo_00510
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Entry
Gromo_00510 CDS
T07728
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gagg
Candidatus Gromoviella agglomerans
Pathway
gagg03410
Base excision repair
gagg03430
Mismatch repair
gagg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Gromo_00510
03430 Mismatch repair
Gromo_00510
03440 Homologous recombination
Gromo_00510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gagg03400
]
Gromo_00510
DNA repair and recombination proteins [BR:
gagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Gromo_00510
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Gromo_00510
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Gromo_00510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UFX98593
LinkDB
All DBs
Position
complement(544051..545967)
Genome browser
AA seq
638 aa
AA seq
DB search
MIILQENLSIKNKIWIISDINTRDLEFVKQKFNLSKISAEILINRSENSDDTYETILDPK
IKNLLPNPLNFHDMKKSANAVINHILEKLPIGIISDYDVDGATSAALIYKFLNLVYHLIH
KKEENKIICKIPHRVKDGYGPSKSIFDEFANEEITLVLTLDCGTTAFESIEYAKEIGIKV
IVIDHHITKNKSLKAFGLINPHDPLTPNDIFSKTKDMAAVGITFIFCSAIIKILKNEHSG
IINILSKELINMLDIVAIGTICDMMPIKGLNRAIIKNGINIIRKQKNIGIKFLCQANEIN
TLQAEDIGYILGPQINAGGRIGQNQYLGFKLLTTNSEIDALRISHELNVLNSMRKDINYD
TQNEIEILIYNENLMNQNFILVHGSWHLGIIGIAASRLKEKFHKPSFVLSNHEEISNNSL
NSIQINHESERNLNINTKSNSLQIDTINHNSETLKGSGRSVEGLHIGHLIDKAINMGILE
NGGGHAMACGFSIKRKNLQKFHEFLKEELTYYSWQADSLKIDSVISCSAINKNILTEIDV
CAPYGNGNARPLFLIDRVFIKNILIIKEKHAKINLSDLRENINAMMFNIDKRTIEFIENT
KSFGNLVSCVVSISEWRGNVSCKIEDITESTNCKIEDN
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgattattttgcaagaaaatttatcaataaaaaataaaatttggatcatttcagacata
aatacaagagatttagaattcgtaaagcaaaaattcaatctcagtaaaatatcagcagaa
atattgatcaacagatctgaaaattctgatgatacatacgaaacaattcttgatccgaaa
atcaaaaatctacttccaaatccattgaattttcatgacatgaagaaatcagcaaatgca
gtcataaatcacatattggaaaaattaccaataggtataataagcgattacgatgttgat
ggagccacatcagctgcattaatctacaaatttttaaatcttgtctatcacttaatacat
aaaaaagaagaaaacaaaatcatatgtaaaattcctcatagagtaaaagatggatacgga
ccatcaaaatccatatttgatgaatttgcaaatgaagaaatcactctcgtacttacatta
gattgcggaacaacagcatttgaatcaattgaatatgcaaaagaaatcggaattaaagta
atagttattgatcatcatataacaaaaaacaaatcactaaaagcatttggattaatcaat
cctcatgatcctctcactccaaatgatattttcagtaaaaccaaagatatggcagcagtt
ggaattacattcatattttgtagtgcaataataaaaattctaaaaaacgaacactcaggc
ataatcaatatcctatcaaaagaattaataaacatgctagatatagtcgcaataggcaca
atatgcgatatgatgccaatcaagggtctcaatagagcaattatcaaaaacggaattaat
ataattagaaagcaaaaaaatattggaataaaattcctatgtcaagcaaatgagataaat
actcttcaggcagaagatataggttatattctcggtccacaaataaatgcaggtggaaga
attggccaaaatcaatatttaggatttaaactactgacaacgaacagcgaaatcgatgct
ttgagaatatcacatgagctaaatgtactaaattctatgagaaaagatataaattatgat
actcaaaatgaaatagaaatattaatatataatgaaaatttgatgaatcaaaatttcatt
ctcgttcatggtagctggcatctcggtataataggcattgcagccagcagactcaaggaa
aaatttcataaacctagttttgttctatcaaatcatgaagaaatttcaaataattcccta
aactcaattcaaataaatcatgaatcagaacgcaatttgaatataaacacaaaatcaaat
tcactccaaatagatacgatcaaccacaattccgaaactttgaaaggatcaggacgctca
gttgaaggactgcacatcggccacttaatcgataaagcaatcaatatgggtattttggaa
aatggaggtggccatgcaatggcatgcggatttagcatcaaaagaaaaaatttacaaaaa
tttcatgaatttcttaaggaagaattaacatattactcttggcaagcggattctctaaag
atagactctgtaatatcatgtagcgcaatcaacaaaaacatattaacagaaatagatgtc
tgcgcaccatatggaaatggtaatgcaaggccgctatttttgatcgatagagtttttatt
aaaaacatattaataattaaagaaaaacacgcaaaaataaatctctcagatttaagagaa
aacataaatgcaatgatgttcaatattgataaaagaacaatagaattcattgaaaacaca
aaatcgtttggcaatttagtgtcatgcgtcgtatccatctcagaatggagaggaaatgta
tcatgcaaaatcgaagatataactgaatctaccaattgcaaaatcgaagataactga
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