Candidatus Gromoviella agglomerans: Gromo_00536
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Entry
Gromo_00536 CDS
T07728
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gagg
Candidatus Gromoviella agglomerans
Pathway
gagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gromo_00536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gagg03019
]
Gromo_00536
03016 Transfer RNA biogenesis [BR:
gagg03016
]
Gromo_00536
Enzymes [BR:
gagg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Gromo_00536
Messenger RNA biogenesis [BR:
gagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Gromo_00536
Transfer RNA biogenesis [BR:
gagg03016
]
Prokaryotic type
tRNA degradation factors
Gromo_00536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
DUF4112
TylF
Motif
Other DBs
NCBI-ProteinID:
UFX98615
LinkDB
All DBs
Position
566266..568110
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AA seq
614 aa
AA seq
DB search
MIVLKILRKEMEYNGKVLSVETARIARNVASVYATYGRSSVLCTVSVGKDRVEDIQFIPL
KVTYQEKDYAFGRIPGGFLKREGRQSNSEILISRTIDRIIRPTIHKMFRNETQIVCELKD
FEQGDDVEILSIIAAEIAIHISPVPVVDFVAPCRVGLLNGHFTTTATNEMDMVVAGNEDG
IVMLEARLCEVPQQQVVKAIEFAMNKIDDIYQFINDFVTTFIDNRDSFAVRYSRDVEIED
HLDLYEDLMPKLCDLYEKLYDKSWYELNDVDQERICDEIVDKFREDYPLSVINVAITDFK
KISMRTLILSHNRRIDGRGVNDIRNISCDMGLLKNSHGSALFSRGFTQAFVSVVLGSPDD
CQVVEEFGLERRENFMFHYNFPQFAVGEVSKSASPGRREIGHGALAKKAISSVLPEFSEF
PYSIRVVSDITESDGSSSMASVCGAICALRNANVPIKSNVAGIAIGVVSNEDEYVIISDI
NSVEDDLGDMDFKITGTENGINAIQLDVKKPIPLEVIIEAMKYGVIGLKSILGVMDAIIG
YIEDFDENAVITRITVGREKLKELINRKILRDICIKTGCKITPLNGDVIIFGHPLSRSNA
KMLIDDILIADGVQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgttgaagattttgagaaaagaaatggagtacaacggaaaggttttatcagtt
gagactgcgaggatagctaggaatgttgcgtcagtatatgctacttatggtaggtcatct
gttttgtgtacggtttctgttgggaaagatagagtggaagatattcagtttattccactt
aaagtgacatatcaggagaaagattacgcttttggtcgtattcctggtggttttttgaaa
agggaggggcgacaatcgaattctgagatattgatctccagaacaattgatagaatcatt
cgtcctactatacataaaatgtttcgtaatgaaacacagattgtttgtgaattgaaggat
tttgagcaaggtgatgatgtagagatattgtcgataattgcagctgagattgctattcat
atctcacctgttcctgttgtggattttgttgctccgtgtagagttggtctactaaatggt
cattttactactactgctacgaacgagatggatatggttgttgctggaaatgaagatggc
attgtgatgttagaagctagattgtgcgaagttcctcagcaacaagttgtgaaagcgatt
gaatttgccatgaataagatagatgatatctatcaatttattaatgattttgtaacaaca
tttattgataacagagatagctttgctgtgcgttactcaagagatgtcgaaattgaagat
catcttgatttgtatgaagatttaatgcccaagctttgtgatttatacgagaagctttat
gataaatcttggtatgagttgaatgatgttgatcaagaaaggatttgtgatgaaatagta
gataaatttcgtgaagattatcctttaagtgtgattaatgttgctattactgattttaag
aaaatttctatgaggactctgattttgtctcataatcgaagaatagatggtaggggagtg
aatgatattagaaatatttcgtgtgatatgggattattgaaaaattctcatggtagtgcg
ctattttctaggggatttactcaagcatttgtatcagtcgtattgggatctcctgatgat
tgccaagttgttgaggaatttggtctagaaagaagagaaaattttatgtttcactataat
tttcctcaatttgcagtcggagaagtgagtaaatctgcttctcctggtaggagagaaatt
gggcatggagctttagctaaaaaagcaatttcatctgttttacctgaattctctgaattt
ccatactccattcgagtggtatctgatattacagagtctgatggatcatcttctatggcc
agtgtttgtggagcaatttgtgctctaagaaatgcaaatgttcctataaaatcaaacgtt
gctggaattgccataggtgttgtaagtaatgaagatgagtatgttattatttctgatatc
aatagtgttgaagatgatttaggagatatggactttaagattactgggactgaaaatggt
attaatgcaattcagttagatgtcaagaagccgattcctcttgaggttataattgaagcc
atgaaatatggtgttattggattgaaaagcattctaggagtaatggatgcgataataggc
tatatcgaggattttgatgaaaatgctgtcataaccagaataacagtcggaagagaaaaa
cttaaggaattgattaatcgtaagattttgagagatatttgtatcaagactgggtgtaag
attactccattgaatggagatgtgattatttttgggcatcctctctcaagaagtaatgca
aagatgttgattgatgatatattgattgcagatggtgtgcagtga
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