Candidatus Gromoviella agglomerans: Gromo_00540
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Entry
Gromo_00540 CDS
T07728
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
gagg
Candidatus Gromoviella agglomerans
Brite
KEGG Orthology (KO) [BR:
gagg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gagg03032
]
Gromo_00540
03036 Chromosome and associated proteins [BR:
gagg03036
]
Gromo_00540
03400 DNA repair and recombination proteins [BR:
gagg03400
]
Gromo_00540
DNA replication proteins [BR:
gagg03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Gromo_00540
Chromosome and associated proteins [BR:
gagg03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Gromo_00540
DNA repair and recombination proteins [BR:
gagg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Gromo_00540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
DUF4840
DUF1236
CheR
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-HIG
Colicin_E5
YolD
Motif
Other DBs
NCBI-ProteinID:
UFX98619
LinkDB
All DBs
Position
571415..571693
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AA seq
92 aa
AA seq
DB search
MNKSDLVKMMKFRFKNFSMKDIDDRVVEVFNAIKYALSHGQQVEIRGFGRFFTKNRKSRV
IVNPRTKQIVQVMEKNVPFFKAGKIQKVFNEK
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgaataagtcggatttagtcaaaatgatgaaatttaggtttaaaaacttttccatgaaa
gatatagatgacagagtagtggaagtgtttaatgcgattaaatacgctttatcacatggt
cagcaagtggaaattcgtggctttggtagatttttcacgaaaaacagaaaatcgcgcgtt
atagtcaatccaagaacgaaacaaattgttcaagtgatggaaaaaaacgttccatttttt
aaagctggaaaaatacagaaagtttttaatgagaaatag
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