Granulosicoccus antarcticus: IMCC3135_08235
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Entry
IMCC3135_08235 CDS
T04938
Symbol
rnr_1
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gai
Granulosicoccus antarcticus
Pathway
gai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC3135_08235 (rnr_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gai03019
]
IMCC3135_08235 (rnr_1)
03016 Transfer RNA biogenesis [BR:
gai03016
]
IMCC3135_08235 (rnr_1)
Enzymes [BR:
gai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IMCC3135_08235 (rnr_1)
Messenger RNA biogenesis [BR:
gai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IMCC3135_08235 (rnr_1)
Transfer RNA biogenesis [BR:
gai03016
]
Prokaryotic type
tRNA degradation factors
IMCC3135_08235 (rnr_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ASJ71750
UniProt:
A0A2Z2NSN8
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All DBs
Position
complement(1896158..1897747)
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AA seq
529 aa
AA seq
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MAMDNNTLIPSPTDVVAEALQSLEIDTTHSPESIAETQHWLSNPGIDDPSLTDYTQLAFV
TIDNPDSRDLDQALLIERHEAAGYRVRYALADAAYYVRAGSALFDEALARGTTYYTPILA
VPMLPVELSEGLVSLNPLVDRRALVFDMIVNEQGAVTRTCVVRAKIHSQAKLSYAGVQAW
LDDAPIAVRPYDDSLLLLRELGNILIKAAIQRGVVRFNRVESHITVDGEPPQFAAAQRSR
YQTERYNEQISLMCNMQGAEMLLAMSGVNDAIQTVFRVHDAPLRKSLSELRDTLDSFAEL
QPNPVPWRWLPDQSLADYVESLPTGEQHARRVMAVQRQIMQAQRASVFTPEAGEHHALRA
ASYARFSSPMREVVGIFTHKELLEALGGHSFEDGSDETLREQVIQVANSSRQRQRKLEKV
IEFAALFSVFSRELALPEPPLHSGTIMGMRGDRLYVALDDLAVDVKLYKDDLQEQFNSAY
TMTDIEAIPETSNQPAWQMAQAVGLTVMDYDKERKRFLFKLAPLDMHSA
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccatggataacaacaccctgattccctcacccaccgatgttgtggccgaagcactg
cagtccctggaaattgataccacccacagcccggaaagtattgccgagactcagcactgg
ctgtcaaatccgggcattgatgatccatcgctgactgattacacacaactggcctttgtc
acgatcgacaaccccgactcaagggatctggaccaggccttgctgatagagcgtcacgag
gccgcaggttatcgcgtccgttatgctctggctgatgccgcgtattacgtacgcgcagga
tccgccttgtttgacgaggcgctggcacgtggcaccacctattacacaccgatactggcg
gtgcccatgctaccggttgagctctcggagggtctcgtatctctcaacccgctagtggat
cgacgtgcactggtctttgacatgattgtcaacgagcagggagccgtgactcgcacctgt
gttgttcgggcaaaaattcatagtcaggccaaactcagttacgccggtgtgcaagcctgg
ctggacgatgcgcccatcgccgtgcgtccctatgacgattctctattgttgctcagggag
ctgggcaacatacttatcaaagcggccatccagcgaggtgtcgtacgcttcaaccgggtg
gaaagccatattactgtggacggtgaaccgccacaattcgctgccgcgcaacgctcccgg
tatcagaccgaacgttacaacgagcagatcagcctgatgtgcaatatgcagggtgccgaa
atgctactggcaatgagtggcgtcaacgatgccattcaaaccgttttccgagttcatgac
gccccactacgcaagagcctgagcgaactacgcgacaccctggattcatttgccgagcta
caaccgaacccggtcccatggcgctggcttcccgatcaatcactggcagattacgtggaa
agtctacccactggcgaacagcacgcacgccgagtcatggccgtgcagcgccagatcatg
caagcgcagcgggcctcggttttcacaccggaagctggcgaacatcacgcactcagagcc
gccagctatgcccgcttttcctctcccatgcgtgaggtagtgggtattttcactcacaag
gaactgcttgaagcactcggtgggcatagttttgaggatgggtcggatgaaacactgcga
gagcaggtcatccaggtcgccaatagctcccgtcaacgccaacgcaagcttgaaaaggtg
attgaatttgctgcgttgttcagcgttttctcacgagagctggcgctacccgagccccct
cttcatagcggcaccatcatgggaatgcggggcgaccgtctgtatgtggctctcgatgac
ctggcagtcgacgtaaagctctacaaggatgacttacaagaacaattcaactccgcctac
accatgacggatatcgaagctatccctgaaacgagcaatcagcctgcctggcagatggcc
caggctgtggggctgacagtcatggactacgataaagagcgcaagcgtttcctcttcaaa
ctagctccgctggatatgcacagtgcatga
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