Granulosicoccus antarcticus: IMCC3135_09675
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Entry
IMCC3135_09675 CDS
T04938
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gai
Granulosicoccus antarcticus
Brite
KEGG Orthology (KO) [BR:
gai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gai03016
]
IMCC3135_09675 (rtcB)
Enzymes [BR:
gai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IMCC3135_09675 (rtcB)
Transfer RNA biogenesis [BR:
gai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IMCC3135_09675 (rtcB)
Prokaryotic type
tRNA splicing ligases
IMCC3135_09675 (rtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASJ72032
UniProt:
A0A2Z2NKU3
LinkDB
All DBs
Position
complement(2183179..2184375)
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AA seq
398 aa
AA seq
DB search
MPIMRTINKGRVPVKIYTDDIDSGACEQLANIARLPFIHSHIAAMPDVHRGIGATVGSVI
PTRGAIVPAAVGVDIGCGMNAVRLSLSGTELPDSLKKTREAIEEAVPVGFNMHKSVKARR
STLTPLDAGLEKILQLHPTVGKMIKNIGRTWSQQIGTLGGGNHFIELCLDENDDVWVMLH
SGSRGIGNVIGRYFINLAKQDMRRLQQNLPDKDLAYFTEGTEYFDDYVHAVQWGQDYAMA
NRREMMRLTLDALKGVLPYFVITKEAINCHHNYVSIEQHFGEHVYLTRKGAISARDGELG
IIPGSMGAKSFIVKGKGNADSFHSCSHGAGRTMSRTVAKRTFNTDDLREQTKGVECRKDA
AVVDEIPGAYKDIDQVMANQSDLIDIVHTLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcatgcgcaccatcaacaaaggccgggttccggtcaagatctacaccgacgat
attgattccggtgcctgtgaacagctggcgaacattgccaggctgcctttcatccacagc
cacattgcggccatgccggacgtacaccggggcatcggcgctactgtcggttcggttatt
cctacccgtggtgcgatcgtaccggcagcagtcggtgtcgatattggctgtggaatgaat
gcagtaagattgtcgctaagcggcaccgaactgcccgatagtctcaagaagacccgcgaa
gccatagaggaggcagtgccggtcggcttcaacatgcacaagtcggtcaaggcacgtcga
tcgaccctgacgccactggatgccggtcttgagaaaatactgcaactacatccgactgtc
ggcaagatgatcaagaacatcggcagaacctggtcccaacaaatagggactctggggggc
ggcaatcacttcatcgaactctgtctggatgaaaatgatgatgtctgggtcatgctgcac
tcgggaagtcgcggaatcggcaatgtcatcgggcgttacttcatcaatctggcaaagcag
gacatgcggcgtttgcagcagaatctgccggacaaggatctcgcgtatttcactgaaggg
actgaatacttcgacgattatgtgcatgccgtgcagtgggggcaggactacgctatggca
aaccggcgcgagatgatgcgcctgacgctggacgcattgaagggggtactaccctacttc
gtgatcacgaaggaagccatcaactgtcatcataattatgtctcgattgagcaacacttc
ggggagcacgtttacctgaccagaaagggtgcaatcagcgctcgtgatggtgagctgggt
atcattcccggcagcatgggtgccaagtctttcatcgtcaaaggcaaaggaaacgcagat
tcattccactcctgttctcacggcgcaggacgcaccatgagtcgaacggtagcgaaaaga
acattcaacaccgacgatctgagggaacaaaccaagggggtggaatgccgcaaggatgcc
gccgtggtagacgagattcccggtgcttacaaggatattgaccaagtgatggctaaccag
tcagatctgattgatatcgttcacacactgaagcaggttgtgtgtgtcaagggttga
DBGET
integrated database retrieval system
