Granulosicoccus antarcticus: IMCC3135_10985
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Entry
IMCC3135_10985 CDS
T04938
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gai
Granulosicoccus antarcticus
Pathway
gai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC3135_10985 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gai03019
]
IMCC3135_10985 (rnj)
Messenger RNA biogenesis [BR:
gai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IMCC3135_10985 (rnj)
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
CDC48_2
DUF8125
Motif
Other DBs
NCBI-ProteinID:
ASJ72289
UniProt:
A0A2Z2NM77
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Position
complement(2467073..2468434)
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AA seq
453 aa
AA seq
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MTPDASDFWFLPLGGCGEIGMNMNLYGHDDQWLMVDCGVTFRDADGSNRSGYHVQMADPG
FITERREQLQALLLTHAHEDHIGAVAHLWRKLRCPIYATAFTAEMLRRKLAEHGLVNKAV
ITLVEPGDRMRIGAFDVEWIPNTHSIPSPCGVAIRTSAGSAFHTADWKLDPNPVIGHHYH
ESIYRALGDSGIQAMVCDSTCADQPGHSLSESALYDGLHHHVTNATGRVVVACFGSNIAR
LHTLARIAKETGRHLGLLGRSLINTAGAAKASGLWPDIPTLVESDHLGYLPRESLLLVAT
GSQGEPRTALHRLSHDSFRDLALQEGDTVIFSARAIPGNESSIEMLIERLQARGIIIVTP
DTSELPIHASGHPGRQELEKLYSWVRPSLVIPVHGEPAHLDAQVDVAKSAGIARQLNGRN
GDLFVIGPNTSIRRNAVPVGRLGVGQKALEKIA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgacacctgatgcaagtgatttctggtttctgcccttgggtggctgcggcgaaatcgga
atgaacatgaacctttacggtcacgacgaccagtggctcatggtggattgcggtgtcaca
ttccgtgacgctgatggtagcaaccgcagtggctatcacgtacagatggccgaccctggc
ttcattacagagcgacgtgagcaactccaagccctgctgctcacacatgctcatgaggat
catatcggcgcggtagcccatttatggcgcaagctgcgttgtccaatctatgcgacggct
ttcacggcagaaatgttacgacgcaagctggcagagcacggtctggtcaacaaggccgtg
atcacgctagtcgagcccggagaccgcatgcgtatcggtgccttcgacgtggaatggatt
cccaacacccactcaatccccagcccatgcggtgttgcaattcgtacctcggcaggcagc
gctttccataccgcggactggaagctggaccccaaccctgttattggccatcactaccat
gagtcaatctaccgggcattgggcgactcggggattcaggccatggtctgtgattcaacc
tgtgcagatcagcccggacattcactatctgaaagcgcgctctacgatggactgcatcat
catgtcactaacgcgactggccgagtggttgtcgcctgcttcggcagcaacattgcacgc
ctgcacacgctcgcaagaatagccaaagagaccggacgacatctgggcttgctgggccga
tctctcatcaatacggcgggtgccgccaaggctagcggcttgtggccggacattcccaca
ttggtcgagtcggaccacctgggctatctgcctcgtgaatccttgctactggtggcaaca
ggtagccagggtgagcctcgcacggcactgcatcgactcagccacgacagcttccgggac
ctggcactgcaggaaggagataccgttatcttcagcgccagagctattccgggtaacgaa
agttctatcgaaatgcttatcgagcgcctacaagctcggggcatcatcatcgtgacaccg
gacacctctgagctgcctatccatgcatccggacatccgggcagacaggaactggaaaaa
ctctacagctgggtcagaccatctctggtaattccggtacacggcgagcccgctcatctt
gatgcccaggtcgatgtcgccaagtcagctggtattgcccgccaactcaatggccgcaat
ggtgatcttttcgtgattggccccaatacgtcgattcgacgcaatgccgttccagtcggt
cgactcggcgtaggccagaaggctcttgagaagatcgcctga
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