Gottfriedia acidiceleris: MY490_01250
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Entry
MY490_01250 CDS
T08082
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gaj
Gottfriedia acidiceleris
Pathway
gaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MY490_01250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaj03019
]
MY490_01250
03009 Ribosome biogenesis [BR:
gaj03009
]
MY490_01250
Enzymes [BR:
gaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MY490_01250
Messenger RNA biogenesis [BR:
gaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MY490_01250
Ribosome biogenesis [BR:
gaj03009
]
Prokaryotic type
rRNA helicases
MY490_01250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UPM54562
LinkDB
All DBs
Position
235444..236988
Genome browser
AA seq
514 aa
AA seq
DB search
MTTFQELGLSSKILFAIEKLGFEEATPIQAQTIPLAKQGHDVIGQAQTGTGKTAAFGVPL
LEKIDVDSNNVQGLVIAPTRELAIQVGEELHKIGMNKGVKILPIYGGQDINRQMRSLKKF
PHIIVGTPGRIQDHINRRTIRLNNVNTVVLDEADEMLNMGFIEDIEAILKEVPENKQTLL
FSATMPDPIRRIAETFMTNPQIVKVQAKEVTMPNIEQHFIEVQEKKKFDVLTRLLDIQTP
ELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLSQAKREQVLRKFKSGSIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGIAMLFITPREFNQLKNIERTTK
RRMERMTAPTLDEAIESQQRIIAEKLTSTMESDNLAFYKRIAEELLEEHDSVSVVAAALK
MLTKEPNETPIRLTDEPPMVKRDRGRGGNGGGGFRRGENKRGGGDNRRGGGDRRGDSRRG
DREGNRGGNFRGKRSEGSRDANRGGQRRHQDSNK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacatttcaagaattaggattaagtagtaagatcctgtttgcgattgaaaaatta
ggcttcgaggaagctacaccaattcaagcgcagactattccattagcaaaacaaggccat
gatgtaattggtcaagcgcaaactggtactggtaaaactgccgcttttggtgttccattg
ctagagaaaattgatgtagatagcaacaatgttcaaggacttgtaatcgcacctacacgt
gaattagcaatccaagttggtgaagaattacacaaaattggtatgaacaaaggtgtaaaa
atccttccgatctacggtggacaagacattaaccgtcaaatgcgttcattaaaaaaattc
ccacatattattgttggaactcctggtcgtattcaagaccatattaaccgtcgtacaatc
cgtcttaataacgttaatacagtggtattagatgaagcggatgaaatgttaaatatggga
ttcattgaagatattgaagcgattttaaaagaagttcctgaaaacaaacaaacacttctt
ttctctgctacaatgccagatccaattcgtcgcattgcagaaacttttatgacaaatcct
caaatcgtaaaagttcaagctaaagaagttacaatgccaaacattgaacaacattttatt
gaagttcaagaaaagaaaaaatttgacgttcttacacgtttattagatattcaaactcca
gaattagcaattatttttggtcgtacaaaacgtcgtgttgatgaattatctgaagcgtta
aacctacgtggttatgcagctgaaggtattcatggtgatttatcacaagcaaaacgtgag
caagtacttcgtaaatttaaatctggttcaattgatgttttggttgcaacggacgtagca
gcgcgtggattagatatttctggtgtaacacacgtttataactttgatattcctcaagat
cctgaaagctatgtacaccgtatcggacgtacaggtcgtgctggaaaatcaggtattgcg
atgttattcatcactccgcgtgagtttaatcaattaaaaaatattgaacgtacaactaaa
cgtcgtatggaacgtatgacggcacctacattggatgaagcaattgaaagtcaacaacgt
atcattgctgaaaaattaacttcaacaatggaaagtgataacttagcattctacaaacgt
attgctgaagaattacttgaagaacatgattcagtaagtgttgttgcagctgctttaaaa
atgctaacaaaagaaccaaatgaaacgccaatccgattaactgatgaaccaccaatggtg
aaacgtgaccgtggacgtggtgggaacggcggaggtggattccgtcgtggcgaaaacaaa
cgtggcggaggagacaatcgtcgtggtggtggagaccgccgtggagatagtcgccgtgga
gatagagaaggaaaccgtggtggaaacttccgtggcaaacgtagtgagggttctcgcgat
gcaaaccgtggcggacaacgtagacaccaagatagcaataaataa
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