Gottfriedia acidiceleris: MY490_01735
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Entry
MY490_01735 CDS
T08082
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gaj
Gottfriedia acidiceleris
Brite
KEGG Orthology (KO) [BR:
gaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gaj03009
]
MY490_01735 (rlmD)
Enzymes [BR:
gaj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MY490_01735 (rlmD)
Ribosome biogenesis [BR:
gaj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MY490_01735 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
MTS
Methyltransf_11
Cons_hypoth95
RrnaAD
N6_N4_Mtase
Ubie_methyltran
Methyltransf_23
PCMT
TPMT
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
UPM54622
LinkDB
All DBs
Position
341030..342418
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AA seq
462 aa
AA seq
DB search
MSKRVLPVEKNQFIDVEFIDLTHEGHGVAKVDGYPIFVPNALPGEKAQIKVLKTSKGFGF
GKIIEFQKESDVRVEPICSIYNQCGGCQTQHMSYEGQLEAKHKQVVEVVKRIGKLDDVVI
HPVLGMENPWSYRNKAQVPVGELEGGLVVGFYQKRSHEIIPMNECYIQGKENDEMIQSVK
DLCEELKIEPYDEVGHKGLLRHIMARYGYYTNESMLVLVTNKVNFAQKDELIARIIEKYP
TITSIIQNVNNEKTNVILGNQTIVLYGSETIKDKIGDITFEISARSFYQVNPTQTKVLYD
KTLEYTNLNGSETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAMINEMTNV
EFEVGKAEEVIPNWYKQGITAEVLVVDPPRKGCDEALLNTIIDMKPSKVVYVSCNPATLA
RDLRVLEDGGYKTVEIQPVDMFPHTSHVEAVAKLVLKEGNRH
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgaaaagagtgttacctgtagaaaagaatcaattcatagatgttgaatttatcgat
ttaacccatgagggacatggagttgcaaaggtagatggatatccaatctttgtaccaaat
gcacttccaggtgaaaaagcacaaattaaggtgctaaaaacaagtaaaggttttggattc
ggtaaaattattgaattccaaaaagaaagtgatgtaagagtagaaccaatttgttcgatt
tacaatcaatgtggtggttgtcaaactcaacatatgagctatgaaggccaacttgaggcg
aaacataaacaagtagtagaagttgtaaaacgaattgggaaacttgatgacgtagtaatc
catccggttttaggaatggaaaatccatggagttatcgtaacaaagcacaagttccagtg
ggggaactagaaggtggattagttgttggattctatcaaaagagaagccatgaaattatt
ccaatgaatgaatgctacattcaaggaaaagaaaatgatgaaatgatacaatccgtgaaa
gatctttgtgaagaattaaaaatcgagccatacgatgaagttggccacaaaggactattg
cgtcatattatggcacgctatggatactatacaaatgaatcaatgctagttcttgttact
aataaagtgaactttgcacaaaaagacgaattgatagctagaattattgagaaatatcca
acgattacaagtattattcaaaacgtaaataatgaaaaaacaaatgtgatacttggaaat
caaacaattgttttatacggaagtgaaacaattaaggataaaattggtgatattactttc
gaaatatccgctcgatcattttatcaagtaaaccctacacaaactaaggtattatatgat
aaaacactggagtatacaaacttaaacggtagtgaaacagttattgatgcatactgtgga
atcggttcaatatccttatttttagctcaaaaggctaaaaaggtttatggtgtagaaatt
gtaccagaagcgattgaagatgcgaaacgaaatgctatgattaacgagatgacaaatgtt
gaatttgaagtagggaaagctgaagaagttatacctaattggtacaagcaaggaattaca
gcagaagtattagttgtagaccctccaagaaaaggttgtgacgaggctttattaaataca
atcattgatatgaagccaagcaaagtagtttatgtatcatgtaatcctgctacattagca
agagatttacgagtacttgaagacggtggttataaaacagtagaaatacagccagtggat
atgttcccacatactagtcatgtagaagctgtcgcgaaattagtacttaaggaagggaac
agacactaa
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