Gottfriedia acidiceleris: MY490_03930
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Entry
MY490_03930 CDS
T08082
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gaj
Gottfriedia acidiceleris
Pathway
gaj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MY490_03930 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaj03400
]
MY490_03930 (ligD)
Enzymes [BR:
gaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MY490_03930 (ligD)
DNA repair and recombination proteins [BR:
gaj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MY490_03930 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UPM55006
LinkDB
All DBs
Position
827667..828911
Genome browser
AA seq
414 aa
AA seq
DB search
MNHYFFQKRNKIYTGIFFILGFNIKDESFLVGLKKENDILQMGTFSNGLSEEEKGILIKA
IEANKKSKKGNIKYVEPGICIELEFQSIENNQLTNAKFISFQLKHAWNECTWDGLLLGNL
NLEEELTLTSPEKVIWKDPYINKESFVSYLAQISSYMLPFLKNRLLTSIRFPNGIDGESF
FQKNCPDYAPGFIKTEEHEGNNFIICNDLSTLLWLGNQLAIEYHIPFQTYRANNPIEIVF
DLDPPNADAFPLAIKAALEMKLIFDSFQIKSYPKVSGSKGIQIHIPIKENSLTYDETRVF
TSFIAHYLIEKFPDDFTIERFKKNRGKRLYIDYVQHAKGKTIISPYSTRGKEKPTVATPL
FWDEVNNQLKIETFTIPFVLNRLENSSCPMDDYFDQENNSLIDLISKIKENESK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaatcattacttttttcaaaaacgtaataaaatttatacaggcattttctttatttta
ggattcaatataaaagatgaaagctttttagtaggactgaaaaaagaaaatgatattttg
caaatggggaccttttcaaatggtcttagcgaagaagagaagggtatattgattaaagca
attgaagcaaataaaaaaagcaaaaaaggtaatataaaatatgttgaacctgggatttgt
attgaacttgagtttcaaagtatagaaaacaaccaattaacaaatgcaaaatttatatcc
tttcaattaaagcatgcatggaatgaatgtacttgggatggcttactattgggtaatctt
aatttggaggaagaattaacacttaccagtcctgaaaaagtaatatggaaggatccatat
ataaataaagagagctttgtttcgtatttagctcaaatatccagttatatgcttccattt
ctaaaaaatcgtttattaacatcgattcgttttccgaatggaatagacggtgaatctttt
tttcaaaaaaactgtccagattatgctccgggttttattaaaactgaagaacatgagggg
aataattttattatttgtaatgatttatcaactttgctgtggttaggaaatcaattagca
atcgaataccatataccttttcaaacatatagagccaataatccgattgaaatcgtattc
gatttagatccacctaatgcagatgcatttcctttagcaataaaagccgcattggaaatg
aaattaatctttgattcttttcaaataaaaagctacccaaaggtatctggaagtaaagga
attcaaattcatattccaattaaagaaaattctcttacctatgatgaaacaagagtattt
acatcttttattgcacattatttaattgaaaaatttccagatgattttacgattgaaaga
tttaaaaaaaatcgagggaaacgtctctatattgattatgttcagcacgcaaaaggaaaa
accattatttccccatactcaacaaggggaaaagaaaaaccaactgttgcaactcctcta
ttttgggatgaggtaaataatcaattaaaaatcgaaacttttacaatcccgtttgtacta
aatcggttagaaaatagttcttgtccaatggatgattattttgatcaagaaaataattct
ttaattgacttaatttcaaaaattaaagaaaacgaatcaaagtaa
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